Help:WikiPathways Portals

For example, a portal could organize pathways for a particular species or research area.

The main advantages of portals include:

• Simplified drawing and collecting your pathways
• Help to keep track of ‘works-in-progress’ with collaborators
• Help attribute credit for pathway authors and curators
• Attract new collaborators
• Help to define a community

Creating a portal is easy using existing templates available from WikiPathways.

If you are interested, please consult the portal maintenance guide and contact us for assistance.

Community Featured Pathways Blau

Unable to get pathway of the day: There are no pathways tagged with 'Curation:Blau'!

• Adverse Outcome Pathway
• Blau (Inborn Errors of Metabolism)
• California Institute for Regenerative Medicine, CIRM
• COVID-19
• Clinical Proteomic Tumor Analysis Consortium, CPTAC
• Disease
• ExRNA
• Lipids
• Micronutrients
• Nanomaterials
• NetPath
• Plant Pathways
• Rare Disease
• Renal Genomics
• Reactome
• Skeletal Dysplasia
• WormBase

Community Featured Pathways COVID-19

Soluble ACE2-mediated cell entry of SARS-CoV-2 (Homo sapiens)
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/d/d6/WP5076_111711.svg:
Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)

Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/d/d6/WP5076_111711.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Soluble ACE2-me...', 'https://classic...', 'Soluble ACE2-me...', 'center', 'pwthumb', '300')
6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP5076', '300', 'center', 'Soluble ACE2-me...', 'pathway', 'Soluble ACE2-me...')
7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPTemplateFrame_DOM))
9. 8 /var/www/wikipathways/includes/parser/Parser.php(2986): PPFrame_DOM->expand(Object(PPNode_DOM))
10. 9 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
11. 10 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
12. 11 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{{Template:Toda...')
13. 12 /var/www/wikipathways/includes/parser/Parser.php(439): Parser->internalParse('{{Template:Toda...')
14. 13 /var/www/wikipathways/wpi/extensions/PathwayOfTheDay/PathwayOfTheDay.php(60): Parser->recursiveTagParse('{{Template:Toda...')
15. 14 [internal function]: getPathwayOfTheDay(Object(Parser), 'Sunday 19 May 2...', 'Curation:COVID1...', 'true')
16. 15 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('getPathwayOfThe...', Array)
17. 16 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
18. 17 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
19. 18 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| class="wikit...')
20. 19 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| class="wikit...')
21. 20 /var/www/wikipathways/includes/Article.php(3406): Parser->parse('{| class="wikit...', Object(Title), Object(ParserOptions), true, true, 111711)
22. 21 /var/www/wikipathways/includes/Article.php(875): Article->outputWikiText('{| class="wikit...', false)
23. 22 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
24. 23 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
25. 24 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
26. 25 {main}