Help:WikiPathways Webservice

From WikiPathways

This page is under construction

WikiPathways can be accessed through a SOAP webservice. This page contains documentation for the webservice API.

Contents 1 WSDL 2 Available functions 2.1 listOrganisms 2.2 listPathways 2.3 getPathway 2.4 getRecentChanges 2.5 login 2.6 getPathwayAs 2.7 updatePathway 2.8 findPathwaysByText 2.9 findPathwaysByXref 3 Examples 3.1 Java 3.2 Taverna

WSDL

The WSDL file for the WikiPathways webservice can be downloaded from: http://www.wikipathways.org/wpi/webservice/webservice.php?wsdl

Available functions

listOrganisms

Get a list of all available organisms.

returns
array of string	The names of the supported organisms

listPathways

Get a list of all available pathways.

returns
array of object WSPathwayInfo	The available pathways.

getPathway

getRecentChanges

login

getPathwayAs

updatePathway

findPathwaysByText

findPathwaysByXref

Examples

Java

Check out the subversion repository for example code on how to call the webservice from Java with Apache Axis 2.

Taverna

You can use the WikiPathways webservice to integrate WikiPathways functions in your Taverna workflows. See myexperiment.org for a set of example workflows that show how to call WikiPathways from Taverna.