Axon guidance (Homo sapiens)
From WikiPathways
(Difference between revisions)
(added KEGG pathway as reference) |
Current revision (15:59, 20 April 2024) (view source) (Modified title) |
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<?xml version="1.0" encoding="UTF-8"?> | <?xml version="1.0" encoding="UTF-8"?> | ||
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- | <Comment | + | <Comment/> |
<Comment Source="WikiPathways-description">Axon Guidance. Pathway took from KEGG (https://www.kegg.jp/entry/map04360)</Comment> | <Comment Source="WikiPathways-description">Axon Guidance. Pathway took from KEGG (https://www.kegg.jp/entry/map04360)</Comment> | ||
<BiopaxRef>ann1</BiopaxRef> | <BiopaxRef>ann1</BiopaxRef> | ||
<BiopaxRef>ba3</BiopaxRef> | <BiopaxRef>ba3</BiopaxRef> | ||
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</Interaction> | </Interaction> | ||
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</Label> | </Label> | ||
<Label TextLabel="Axon repulsion" GraphId="a5031"> | <Label TextLabel="Axon repulsion" GraphId="a5031"> | ||
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</Label> | </Label> | ||
<Label TextLabel="Transcription" GraphId="a88fa"> | <Label TextLabel="Transcription" GraphId="a88fa"> | ||
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</Label> | </Label> | ||
<Label TextLabel="Attraction" GraphId="c7b43"> | <Label TextLabel="Attraction" GraphId="c7b43"> | ||
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</Label> | </Label> | ||
<Label TextLabel="Repulsion" GraphId="da94b"> | <Label TextLabel="Repulsion" GraphId="da94b"> | ||
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</Label> | </Label> | ||
<Label TextLabel="Attraction" GraphId="f3efc"> | <Label TextLabel="Attraction" GraphId="f3efc"> | ||
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</Label> | </Label> | ||
<Label TextLabel="Axon attraction" GraphId="f3965"> | <Label TextLabel="Axon attraction" GraphId="f3965"> | ||
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</Label> | </Label> | ||
<Label TextLabel="Microtubule organization" GraphId="b7127"> | <Label TextLabel="Microtubule organization" GraphId="b7127"> | ||
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</Label> | </Label> | ||
<Shape TextLabel="Neuron" GraphId="ca1"> | <Shape TextLabel="Neuron" GraphId="ca1"> | ||
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</Shape> | </Shape> | ||
<Shape TextLabel="Guidance cues" GraphId="ca2"> | <Shape TextLabel="Guidance cues" GraphId="ca2"> | ||
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</Shape> | </Shape> | ||
<Shape TextLabel="Null" GraphId="ca3"> | <Shape TextLabel="Null" GraphId="ca3"> | ||
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</Shape> | </Shape> | ||
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<Biopax> | <Biopax> | ||
<bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#"> | <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#"> | ||
Line 2,049: | Line 2,049: | ||
</bp:PublicationXref> | </bp:PublicationXref> | ||
<bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="ba3"> | <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="ba3"> | ||
- | <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string" | + | <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string"/> |
<bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PubMed</bp:DB> | <bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PubMed</bp:DB> | ||
- | <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string" | + | <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string"/> |
<bp:SOURCE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://www.kegg.jp/entry/map04360</bp:SOURCE> | <bp:SOURCE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://www.kegg.jp/entry/map04360</bp:SOURCE> | ||
- | <bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string" | + | <bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string"/> |
</bp:PublicationXref> | </bp:PublicationXref> | ||
</Biopax> | </Biopax> | ||
</Pathway> | </Pathway> |
Current revision
Error rendering pathway page
This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.
Pathway history
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Error details
exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/2/2e/WP5289_prev.svg: <BR>Status:1 <BR>Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source) <BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/2/2e/WP5289_prev.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace: #0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...') #1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg') #2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg') #3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState)) #4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array) #5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array) #6 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 129446) #7 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<?xml version="...', Object(Title), true, true) #8 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<?xml version="...', Object(Title), true) #9 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<?xml version="...') #10 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision() #11 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false) #12 /var/www/wikipathways/includes/Wiki.php(437): Article->view() #13 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest)) #14 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest)) #15 {main}