Metabolism of T-2 toxin and HT-2 toxin (Triticum aestivum)

From WikiPathways

(Difference between revisions)
Jump to: navigation, search
(Added a third paper, explaining the structure elucidation.)
Current revision (11:56, 20 April 2024) (view source)
(Modified description)
 
Line 1: Line 1:
<?xml version="1.0" encoding="UTF-8"?>
<?xml version="1.0" encoding="UTF-8"?>
<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="Metabolism of T-2 toxin and HT-2 toxin" Version="20231107" Organism="Triticum aestivum">
<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="Metabolism of T-2 toxin and HT-2 toxin" Version="20231107" Organism="Triticum aestivum">
-
   <Comment Source="WikiPathways-description">Mycotoxin metabolism pathway in wheat with putative biotransformation products. Compounds where converted into identifiers using the 2D drawings in Figure 4 from Nathanail et al. 2015. Structure elucidation is detailed in Meng-Reiterer et al. 2015.</Comment>
+
   <Comment Source="WikiPathways-description">The T-2 (also T2) toxin is cause of food poisoning. Metabolisation to HT-2 is reported as a detoxification mechanism in mammals. This pathway describes the mycotoxin metabolism pathway of T-2 in wheat with putative biotransformation products. Compounds where converted into identifiers using the 2D drawings in Figure 4 from Nathanail et al. 2015. Structure elucidation is detailed in Meng-Reiterer et al. 2015.</Comment>
   <Comment Source="WikiPathways-description">new mycotoxin metabolism pathway</Comment>
   <Comment Source="WikiPathways-description">new mycotoxin metabolism pathway</Comment>
   <Comment Source="WikiPathways-description">new mycotoxin metabolism pathway</Comment>
   <Comment Source="WikiPathways-description">new mycotoxin metabolism pathway</Comment>
Line 7: Line 7:
   <BiopaxRef>e42</BiopaxRef>
   <BiopaxRef>e42</BiopaxRef>
   <BiopaxRef>b7e</BiopaxRef>
   <BiopaxRef>b7e</BiopaxRef>
-
   <Graphics BoardWidth="637.0" BoardHeight="586.5" />
+
   <Graphics BoardWidth="637.0" BoardHeight="586.5"/>
   <DataNode TextLabel="T-2 toxin" GraphId="ef219" Type="Metabolite">
   <DataNode TextLabel="T-2 toxin" GraphId="ef219" Type="Metabolite">
-
     <Graphics CenterX="299.0" CenterY="164.0" Width="90.0" Height="25.0" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff" />
+
     <Graphics CenterX="299.0" CenterY="164.0" Width="90.0" Height="25.0" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff"/>
-
     <Xref Database="ChEBI" ID="CHEBI:9381" />
+
     <Xref Database="ChEBI" ID="CHEBI:9381"/>
   </DataNode>
   </DataNode>
   <DataNode TextLabel="HT-2 toxin" GraphId="b5fbc" Type="Metabolite">
   <DataNode TextLabel="HT-2 toxin" GraphId="b5fbc" Type="Metabolite">
-
     <Graphics CenterX="299.0" CenterY="261.0" Width="90.0" Height="25.0" ZOrder="32769" FontSize="12" Valign="Middle" Color="0000ff" />
+
     <Graphics CenterX="299.0" CenterY="261.0" Width="90.0" Height="25.0" ZOrder="32769" FontSize="12" Valign="Middle" Color="0000ff"/>
-
     <Xref Database="ChEBI" ID="CHEBI:138861" />
+
     <Xref Database="ChEBI" ID="CHEBI:138861"/>
   </DataNode>
   </DataNode>
   <DataNode TextLabel="3-acetyl-T2" GraphId="aec7c" Type="Metabolite">
   <DataNode TextLabel="3-acetyl-T2" GraphId="aec7c" Type="Metabolite">
-
     <Graphics CenterX="156.0" CenterY="94.0" Width="90.0" Height="25.0" ZOrder="32771" FontSize="12" Valign="Middle" Color="0000ff" />
+
     <Graphics CenterX="156.0" CenterY="94.0" Width="90.0" Height="25.0" ZOrder="32771" FontSize="12" Valign="Middle" Color="0000ff"/>
-
     <Xref Database="PubChem-compound" ID="49796734" />
+
     <Xref Database="PubChem-compound" ID="49796734"/>
   </DataNode>
   </DataNode>
   <DataNode TextLabel="3-trans-feruloyl-T2" GraphId="f07de" Type="Metabolite">
   <DataNode TextLabel="3-trans-feruloyl-T2" GraphId="f07de" Type="Metabolite">
-
     <Graphics CenterX="512.25" CenterY="89.0" Width="119.0" Height="25.0" ZOrder="32772" FontSize="12" Valign="Middle" Color="0000ff" />
+
     <Graphics CenterX="512.25" CenterY="89.0" Width="119.0" Height="25.0" ZOrder="32772" FontSize="12" Valign="Middle" Color="0000ff"/>
-
     <Xref Database="PubChem-compound" ID="165362807" />
+
     <Xref Database="PubChem-compound" ID="165362807"/>
   </DataNode>
   </DataNode>
   <DataNode TextLabel="3-trans-isoferuloyl-T2" GraphId="e8cc2" Type="Metabolite">
   <DataNode TextLabel="3-trans-isoferuloyl-T2" GraphId="e8cc2" Type="Metabolite">
-
     <Graphics CenterX="512.25" CenterY="164.0" Width="119.0" Height="25.0" ZOrder="32773" FontSize="12" Valign="Middle" Color="0000ff" />
+
     <Graphics CenterX="512.25" CenterY="164.0" Width="119.0" Height="25.0" ZOrder="32773" FontSize="12" Valign="Middle" Color="0000ff"/>
-
     <Xref Database="Wikidata" ID="Q125535949" />
+
     <Xref Database="Wikidata" ID="Q125535949"/>
   </DataNode>
   </DataNode>
   <DataNode TextLabel="HT2-3-glucoside" GraphId="c7619" Type="Metabolite">
   <DataNode TextLabel="HT2-3-glucoside" GraphId="c7619" Type="Metabolite">
-
     <Graphics CenterX="299.0" CenterY="374.0" Width="99.0" Height="25.0" ZOrder="32775" FontSize="12" Valign="Middle" Color="0000ff" />
+
     <Graphics CenterX="299.0" CenterY="374.0" Width="99.0" Height="25.0" ZOrder="32775" FontSize="12" Valign="Middle" Color="0000ff"/>
-
     <Xref Database="Wikidata" ID="Q125536588" />
+
     <Xref Database="Wikidata" ID="Q125536588"/>
   </DataNode>
   </DataNode>
   <DataNode TextLabel="15-acetyl-T2-tretraol-3-glucoside" GraphId="ef4fc" Type="Metabolite">
   <DataNode TextLabel="15-acetyl-T2-tretraol-3-glucoside" GraphId="ef4fc" Type="Metabolite">
-
     <Graphics CenterX="512.25" CenterY="257.0" Width="189.5" Height="25.0" ZOrder="32776" FontSize="12" Valign="Middle" Color="0000ff" />
+
     <Graphics CenterX="512.25" CenterY="257.0" Width="189.5" Height="25.0" ZOrder="32776" FontSize="12" Valign="Middle" Color="0000ff"/>
-
     <Xref Database="Wikidata" ID="Q125536699" />
+
     <Xref Database="Wikidata" ID="Q125536699"/>
   </DataNode>
   </DataNode>
   <DataNode TextLabel="T2-triol-3-glucoside" GraphId="f9105" Type="Metabolite">
   <DataNode TextLabel="T2-triol-3-glucoside" GraphId="f9105" Type="Metabolite">
-
     <Graphics CenterX="512.25" CenterY="325.0" Width="119.5" Height="25.0" ZOrder="32777" FontSize="12" Valign="Middle" Color="0000ff" />
+
     <Graphics CenterX="512.25" CenterY="325.0" Width="119.5" Height="25.0" ZOrder="32777" FontSize="12" Valign="Middle" Color="0000ff"/>
-
     <Xref Database="Wikidata" ID="Q125536589" />
+
     <Xref Database="Wikidata" ID="Q125536589"/>
   </DataNode>
   </DataNode>
   <DataNode TextLabel="3'hydroxy-HT2-3-glucoside" GraphId="ed397" Type="Metabolite">
   <DataNode TextLabel="3'hydroxy-HT2-3-glucoside" GraphId="ed397" Type="Metabolite">
-
     <Graphics CenterX="512.25" CenterY="398.0" Width="167.5" Height="25.0" ZOrder="32778" FontSize="12" Valign="Middle" Color="0000ff" />
+
     <Graphics CenterX="512.25" CenterY="398.0" Width="167.5" Height="25.0" ZOrder="32778" FontSize="12" Valign="Middle" Color="0000ff"/>
-
     <Xref Database="Wikidata" ID="Q125536590" />
+
     <Xref Database="Wikidata" ID="Q125536590"/>
   </DataNode>
   </DataNode>
   <DataNode TextLabel="dehydro-HT2-3-glucoside" GraphId="a3cc1" Type="Metabolite">
   <DataNode TextLabel="dehydro-HT2-3-glucoside" GraphId="a3cc1" Type="Metabolite">
-
     <Graphics CenterX="512.25" CenterY="544.0" Width="154.5" Height="25.0" ZOrder="32779" FontSize="12" Valign="Middle" Color="0000ff" />
+
     <Graphics CenterX="512.25" CenterY="544.0" Width="154.5" Height="25.0" ZOrder="32779" FontSize="12" Valign="Middle" Color="0000ff"/>
-
     <Xref Database="Wikidata" ID="Q125536591" />
+
     <Xref Database="Wikidata" ID="Q125536591"/>
   </DataNode>
   </DataNode>
   <DataNode TextLabel="HT2-3-di-(1,6)-glucoside" GraphId="d89fc" Type="Metabolite">
   <DataNode TextLabel="HT2-3-di-(1,6)-glucoside" GraphId="d89fc" Type="Metabolite">
-
     <Graphics CenterX="103.25" CenterY="300.0" Width="134.5" Height="25.0" ZOrder="32780" FontSize="12" Valign="Middle" Color="0000ff" />
+
     <Graphics CenterX="103.25" CenterY="300.0" Width="134.5" Height="25.0" ZOrder="32780" FontSize="12" Valign="Middle" Color="0000ff"/>
-
     <Xref Database="Wikidata" ID="Q125536762" />
+
     <Xref Database="Wikidata" ID="Q125536762"/>
   </DataNode>
   </DataNode>
   <DataNode TextLabel="HT2-3-di-(1,4)-glucoside" GraphId="d88a7" Type="Metabolite">
   <DataNode TextLabel="HT2-3-di-(1,4)-glucoside" GraphId="d88a7" Type="Metabolite">
-
     <Graphics CenterX="105.25" CenterY="415.0" Width="134.5" Height="25.0" ZOrder="32781" FontSize="12" Valign="Middle" Color="0000ff" />
+
     <Graphics CenterX="105.25" CenterY="415.0" Width="134.5" Height="25.0" ZOrder="32781" FontSize="12" Valign="Middle" Color="0000ff"/>
-
     <Xref Database="Wikidata" ID="Q125536763" />
+
     <Xref Database="Wikidata" ID="Q125536763"/>
   </DataNode>
   </DataNode>
   <DataNode TextLabel="HT2-3-malonyl-glucoside" GraphId="ab697" Type="Metabolite">
   <DataNode TextLabel="HT2-3-malonyl-glucoside" GraphId="ab697" Type="Metabolite">
-
     <Graphics CenterX="299.0" CenterY="489.0" Width="143.0" Height="25.0" ZOrder="32782" FontSize="12" Valign="Middle" Color="0000ff" />
+
     <Graphics CenterX="299.0" CenterY="489.0" Width="143.0" Height="25.0" ZOrder="32782" FontSize="12" Valign="Middle" Color="0000ff"/>
-
     <Xref Database="Wikidata" ID="Q125536677" />
+
     <Xref Database="Wikidata" ID="Q125536677"/>
   </DataNode>
   </DataNode>
   <DataNode TextLabel="3'hydroxy-HT2-3-malonyl-glucoside" GraphId="b88be" Type="Metabolite">
   <DataNode TextLabel="3'hydroxy-HT2-3-malonyl-glucoside" GraphId="b88be" Type="Metabolite">
-
     <Graphics CenterX="129.0" CenterY="544.0" Width="194.0" Height="25.0" ZOrder="32783" FontSize="12" Valign="Middle" Color="0000ff" />
+
     <Graphics CenterX="129.0" CenterY="544.0" Width="194.0" Height="25.0" ZOrder="32783" FontSize="12" Valign="Middle" Color="0000ff"/>
-
     <Xref Database="Wikidata" ID="Q125536679" />
+
     <Xref Database="Wikidata" ID="Q125536679"/>
   </DataNode>
   </DataNode>
   <Interaction GraphId="id7ae30159">
   <Interaction GraphId="id7ae30159">
     <Graphics ZOrder="12288" LineThickness="1.0">
     <Graphics ZOrder="12288" LineThickness="1.0">
-
       <Point X="276.5" Y="151.5" GraphRef="ef219" RelX="-0.5" RelY="-1.0" />
+
       <Point X="276.5" Y="151.5" GraphRef="ef219" RelX="-0.5" RelY="-1.0"/>
-
       <Point X="178.5" Y="106.5" GraphRef="aec7c" RelX="0.5" RelY="1.0" ArrowHead="mim-conversion" />
+
       <Point X="178.5" Y="106.5" GraphRef="aec7c" RelX="0.5" RelY="1.0" ArrowHead="mim-conversion"/>
     </Graphics>
     </Graphics>
-
     <Xref Database="" ID="" />
+
     <Xref Database="" ID=""/>
   </Interaction>
   </Interaction>
   <Interaction GraphId="id80b93d3a">
   <Interaction GraphId="id80b93d3a">
     <Graphics ZOrder="12288" LineThickness="1.0">
     <Graphics ZOrder="12288" LineThickness="1.0">
-
       <Point X="299.0" Y="273.5" GraphRef="b5fbc" RelX="0.0" RelY="1.0" />
+
       <Point X="299.0" Y="273.5" GraphRef="b5fbc" RelX="0.0" RelY="1.0"/>
-
       <Point X="299.0" Y="361.5" GraphRef="c7619" RelX="0.0" RelY="-1.0" ArrowHead="mim-conversion" />
+
       <Point X="299.0" Y="361.5" GraphRef="c7619" RelX="0.0" RelY="-1.0" ArrowHead="mim-conversion"/>
     </Graphics>
     </Graphics>
-
     <Xref Database="" ID="" />
+
     <Xref Database="" ID=""/>
   </Interaction>
   </Interaction>
   <Interaction GraphId="id9381ab3a">
   <Interaction GraphId="id9381ab3a">
     <Graphics ZOrder="12288" LineThickness="1.0">
     <Graphics ZOrder="12288" LineThickness="1.0">
-
       <Point X="321.5" Y="176.5" GraphRef="ef219" RelX="0.5" RelY="1.0" />
+
       <Point X="321.5" Y="176.5" GraphRef="ef219" RelX="0.5" RelY="1.0"/>
-
       <Point X="321.5" Y="248.5" GraphRef="b5fbc" RelX="0.5" RelY="-1.0" ArrowHead="mim-conversion" />
+
       <Point X="321.5" Y="248.5" GraphRef="b5fbc" RelX="0.5" RelY="-1.0" ArrowHead="mim-conversion"/>
     </Graphics>
     </Graphics>
-
     <Xref Database="" ID="" />
+
     <Xref Database="" ID=""/>
   </Interaction>
   </Interaction>
   <Interaction GraphId="ida00799cd">
   <Interaction GraphId="ida00799cd">
     <Graphics ZOrder="12288" LineThickness="1.0">
     <Graphics ZOrder="12288" LineThickness="1.0">
-
       <Point X="249.5" Y="367.75" GraphRef="c7619" RelX="-1.0" RelY="-0.5" />
+
       <Point X="249.5" Y="367.75" GraphRef="c7619" RelX="-1.0" RelY="-0.5"/>
-
       <Point X="136.875" Y="312.5" GraphRef="d89fc" RelX="0.5" RelY="1.0" ArrowHead="mim-conversion" />
+
       <Point X="136.875" Y="312.5" GraphRef="d89fc" RelX="0.5" RelY="1.0" ArrowHead="mim-conversion"/>
     </Graphics>
     </Graphics>
-
     <Xref Database="" ID="" />
+
     <Xref Database="" ID=""/>
   </Interaction>
   </Interaction>
   <Interaction GraphId="ida595a78f">
   <Interaction GraphId="ida595a78f">
     <Graphics ZOrder="12288" LineThickness="1.0">
     <Graphics ZOrder="12288" LineThickness="1.0">
-
       <Point X="344.0" Y="164.0" GraphRef="ef219" RelX="1.0" RelY="0.0" />
+
       <Point X="344.0" Y="164.0" GraphRef="ef219" RelX="1.0" RelY="0.0"/>
-
       <Point X="452.75" Y="164.0" GraphRef="e8cc2" RelX="-1.0" RelY="0.0" ArrowHead="mim-conversion" />
+
       <Point X="452.75" Y="164.0" GraphRef="e8cc2" RelX="-1.0" RelY="0.0" ArrowHead="mim-conversion"/>
     </Graphics>
     </Graphics>
-
     <Xref Database="" ID="" />
+
     <Xref Database="" ID=""/>
   </Interaction>
   </Interaction>
   <Interaction GraphId="f1dc6">
   <Interaction GraphId="f1dc6">
     <Graphics ZOrder="32770" LineThickness="1.0">
     <Graphics ZOrder="32770" LineThickness="1.0">
-
       <Point X="276.5" Y="248.5" GraphRef="b5fbc" RelX="-0.5" RelY="-1.0" />
+
       <Point X="276.5" Y="248.5" GraphRef="b5fbc" RelX="-0.5" RelY="-1.0"/>
-
       <Point X="276.5" Y="176.5" GraphRef="ef219" RelX="-0.5" RelY="1.0" ArrowHead="mim-conversion" />
+
       <Point X="276.5" Y="176.5" GraphRef="ef219" RelX="-0.5" RelY="1.0" ArrowHead="mim-conversion"/>
     </Graphics>
     </Graphics>
-
     <Xref Database="" ID="" />
+
     <Xref Database="" ID=""/>
   </Interaction>
   </Interaction>
   <Interaction GraphId="bf7af">
   <Interaction GraphId="bf7af">
     <Graphics ZOrder="32774" LineThickness="1.0">
     <Graphics ZOrder="32774" LineThickness="1.0">
-
       <Point X="321.5" Y="151.5" GraphRef="ef219" RelX="0.5" RelY="-1.0" />
+
       <Point X="321.5" Y="151.5" GraphRef="ef219" RelX="0.5" RelY="-1.0"/>
-
       <Point X="452.75" Y="89.0" GraphRef="f07de" RelX="-1.0" RelY="0.0" ArrowHead="mim-conversion" />
+
       <Point X="452.75" Y="89.0" GraphRef="f07de" RelX="-1.0" RelY="0.0" ArrowHead="mim-conversion"/>
     </Graphics>
     </Graphics>
-
     <Xref Database="" ID="" />
+
     <Xref Database="" ID=""/>
   </Interaction>
   </Interaction>
   <Interaction GraphId="b9444">
   <Interaction GraphId="b9444">
     <Graphics ZOrder="32784" LineThickness="1.0">
     <Graphics ZOrder="32784" LineThickness="1.0">
-
       <Point X="249.5" Y="380.25" />
+
       <Point X="249.5" Y="380.25"/>
-
       <Point X="138.875" Y="402.5" GraphRef="d88a7" RelX="0.5" RelY="-1.0" ArrowHead="mim-conversion" />
+
       <Point X="138.875" Y="402.5" GraphRef="d88a7" RelX="0.5" RelY="-1.0" ArrowHead="mim-conversion"/>
     </Graphics>
     </Graphics>
-
     <Xref Database="" ID="" />
+
     <Xref Database="" ID=""/>
   </Interaction>
   </Interaction>
   <Interaction GraphId="fea7f">
   <Interaction GraphId="fea7f">
     <Graphics ZOrder="32785" LineThickness="1.0">
     <Graphics ZOrder="32785" LineThickness="1.0">
-
       <Point X="299.0" Y="386.5" GraphRef="c7619" RelX="0.0" RelY="1.0" />
+
       <Point X="299.0" Y="386.5" GraphRef="c7619" RelX="0.0" RelY="1.0"/>
-
       <Point X="299.0" Y="476.5" GraphRef="ab697" RelX="0.0" RelY="-1.0" ArrowHead="mim-conversion" />
+
       <Point X="299.0" Y="476.5" GraphRef="ab697" RelX="0.0" RelY="-1.0" ArrowHead="mim-conversion"/>
     </Graphics>
     </Graphics>
-
     <Xref Database="" ID="" />
+
     <Xref Database="" ID=""/>
   </Interaction>
   </Interaction>
   <Interaction GraphId="db13f">
   <Interaction GraphId="db13f">
     <Graphics ZOrder="32786" LineThickness="1.0">
     <Graphics ZOrder="32786" LineThickness="1.0">
-
       <Point X="263.25" Y="501.5" GraphRef="ab697" RelX="-0.5" RelY="1.0" />
+
       <Point X="263.25" Y="501.5" GraphRef="ab697" RelX="-0.5" RelY="1.0"/>
-
       <Point X="177.5" Y="531.5" GraphRef="b88be" RelX="0.5" RelY="-1.0" ArrowHead="mim-conversion" />
+
       <Point X="177.5" Y="531.5" GraphRef="b88be" RelX="0.5" RelY="-1.0" ArrowHead="mim-conversion"/>
     </Graphics>
     </Graphics>
-
     <Xref Database="" ID="" />
+
     <Xref Database="" ID=""/>
   </Interaction>
   </Interaction>
   <Interaction GraphId="e91b3">
   <Interaction GraphId="e91b3">
     <Graphics ZOrder="32787" LineThickness="1.0">
     <Graphics ZOrder="32787" LineThickness="1.0">
-
       <Point X="323.75" Y="361.5" GraphRef="c7619" RelX="0.5" RelY="-1.0" />
+
       <Point X="323.75" Y="361.5" GraphRef="c7619" RelX="0.5" RelY="-1.0"/>
-
       <Point X="415.0" Y="265.0" ArrowHead="mim-conversion" />
+
       <Point X="415.0" Y="265.0" ArrowHead="mim-conversion"/>
     </Graphics>
     </Graphics>
-
     <Xref Database="" ID="" />
+
     <Xref Database="" ID=""/>
   </Interaction>
   </Interaction>
   <Interaction GraphId="e56d6">
   <Interaction GraphId="e56d6">
     <Graphics ZOrder="32788" LineThickness="1.0">
     <Graphics ZOrder="32788" LineThickness="1.0">
-
       <Point X="348.5" Y="367.75" GraphRef="c7619" RelX="1.0" RelY="-0.5" />
+
       <Point X="348.5" Y="367.75" GraphRef="c7619" RelX="1.0" RelY="-0.5"/>
-
       <Point X="452.5" Y="325.0" GraphRef="f9105" RelX="-1.0" RelY="0.0" ArrowHead="mim-conversion" />
+
       <Point X="452.5" Y="325.0" GraphRef="f9105" RelX="-1.0" RelY="0.0" ArrowHead="mim-conversion"/>
     </Graphics>
     </Graphics>
-
     <Xref Database="" ID="" />
+
     <Xref Database="" ID=""/>
   </Interaction>
   </Interaction>
   <Interaction GraphId="cea7a">
   <Interaction GraphId="cea7a">
     <Graphics ZOrder="32789" LineThickness="1.0">
     <Graphics ZOrder="32789" LineThickness="1.0">
-
       <Point X="348.5" Y="380.25" />
+
       <Point X="348.5" Y="380.25"/>
-
       <Point X="428.5" Y="398.0" GraphRef="ed397" RelX="-1.0" RelY="0.0" ArrowHead="mim-conversion" />
+
       <Point X="428.5" Y="398.0" GraphRef="ed397" RelX="-1.0" RelY="0.0" ArrowHead="mim-conversion"/>
     </Graphics>
     </Graphics>
-
     <Xref Database="" ID="" />
+
     <Xref Database="" ID=""/>
   </Interaction>
   </Interaction>
   <Interaction GraphId="f23c9">
   <Interaction GraphId="f23c9">
     <Graphics ZOrder="32790" LineThickness="1.0">
     <Graphics ZOrder="32790" LineThickness="1.0">
-
       <Point X="512.25" Y="410.5" GraphRef="ed397" RelX="0.0" RelY="1.0" />
+
       <Point X="512.25" Y="410.5" GraphRef="ed397" RelX="0.0" RelY="1.0"/>
-
       <Point X="512.25" Y="531.5" GraphRef="a3cc1" RelX="0.0" RelY="-1.0" ArrowHead="mim-conversion" />
+
       <Point X="512.25" Y="531.5" GraphRef="a3cc1" RelX="0.0" RelY="-1.0" ArrowHead="mim-conversion"/>
     </Graphics>
     </Graphics>
-
     <Xref Database="" ID="" />
+
     <Xref Database="" ID=""/>
   </Interaction>
   </Interaction>
-
   <InfoBox CenterX="0.0" CenterY="0.0" />
+
   <InfoBox CenterX="0.0" CenterY="0.0"/>
   <Biopax>
   <Biopax>
     <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="e42">
     <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="e42">

Current revision

Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

View all...
CompareRevisionActionTimeUserComment
129445view11:56, 20 April 2024EgonwModified description
129444view11:53, 20 April 2024EgonwAdded a third paper, explaining the structure elucidation.
129443view11:50, 20 April 2024EgonwModified description
129442view11:32, 20 April 2024EgonwLast two identifiers
129441view11:17, 20 April 2024EgonwAnother metabolite ID and an additional article
129440view11:10, 20 April 2024EgonwTwo more
129439view10:55, 20 April 2024EgonwFour more (new) metabolite identifiers
129438view08:54, 20 April 2024EgonwFigured out three more identifiers
129437view08:26, 20 April 2024EgonwAdded the missing literature reference
129433view12:12, 19 April 2024JmillanacostaOntology Term : 'toxic secondary metabolite metabolic pathway' added !
129426view07:39, 18 April 2024MaintBotTypo fix
127679view23:13, 21 November 2023EweitzModified title
127673view20:47, 18 November 2023EgonwAdded two key identifiers
127614view17:06, 7 November 2023EgonwAll metabolites drawn now
127606view10:28, 7 November 2023EgonwCorrect species
127605view09:46, 7 November 2023EgonwNew pathway

Error details 

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/b/b5/WP5425_prev.svg:
<BR>Status:1
<BR>Message:Exception in thread "main" java.lang.NullPointerException
	at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
	at org.pathvisio.core.Engine.importPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/b/b5/WP5425_prev.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 129445)
#7 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<?xml version="...', Object(Title), true, true)
#8 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<?xml version="...', Object(Title), true)
#9 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<?xml version="...')
#10 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
#11 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
#12 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#13 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#14 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#15 {main}
Retrieved from "https://classic.wikipathways.org/index.php/Pathway:WP5425"
Personal tools