FAS pathway and stress induction of HSP regulation (Mus musculus)
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exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/0/0b/WP571_38190.svg: <BR>Status:254 <BR>Message:[ 0.592] Info: Recognized format [Namespace: prefix "" is mapped to URI "http://genmapp.org/GPML/2008a"] Error: Document is invalid according to the xml-schema definition!: Exception in startElement: cvc-id.2: There are multiple occurrences of ID value 'df6'. org.jdom.JDOMException: Exception in startElement: cvc-id.2: There are multiple occurrences of ID value 'df6'.: Exception in startElement: cvc-id.2: There are multiple occurrences of ID value 'df6'. Error: The invalid XML code: <?xml version="1.0" encoding="UTF-8"?> <Pathway xmlns="http://genmapp.org/GPML/2008a" Name="FAS pathway and Stress induction of HSP regulation" Data-Source="GenMAPP 2.0" Version="20041216" Author="Adapted from BioCarta by Sebastien Burel" Email="[email protected]" Last-Modified="12/9/2009" Organism="Mus musculus"> <Comment Source="WikiPathways-category">Cellular Process</Comment> <Comment Source="HomologyConvert">This pathway was inferred from Homo sapiens pathway [http://www.wikipathways.org/index.php?title=Pathway:WP314&amp;amp;oldid=21341 WP314(r21341)] with a 94% conversion rate.</Comment> <Comment Source="WikiPathways-description">This pathway describes the Fas induced apoptosis and interplay with Hsp27 in response to stress. More info: [http://www.biocarta.com/pathfiles/h_hsp27Pathway.asp BioCarta].</Comment> <BiopaxRef>c79</BiopaxRef> <Graphics BoardWidth="18150.0" BoardHeight="13145.6105" /> <DataNode BackpageHead="Daxx" TextLabel="Daxx" Type="GeneProduct" GraphId="df6" GroupRef="d8cbe"> <Attribute Key="org.pathvisio.model.BackpageHead" Value="Daxx" /> <Graphics Color="000000" CenterX="5600.0" CenterY="2265.0" Width="700.0" Height="300.0" ZOrder="32768" /> <Xref Database="Entrez Gene" ID="13163" /> </DataNode> <DataNode BackpageHead="TEST" TextLabel="Daxx" Type="GeneProduct" GraphId="df6" GroupRef="d8cbe"> <Attribute Key="org.pathvisio.model.BackpageHead" Value="Daxx" /> <Graphics Color="000000" CenterX="3800.0" CenterY="1450.0" Width="700.0" Height="300.0" ZOrder="32768" /> <Xref Database="Entrez Gene" ID="13163" /> </DataNode> <DataNode BackpageHead="Daxx" TextLabel="Daxx" Type="GeneProduct" GraphId="bc0"> <Attribute Key="org.pathvisio.model.BackpageHead" Value="Daxx" /> <Graphics Color="000000" 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Height="150.0" ZOrder="28672" /> </Label> <Label TextLabel="DNA presentation" GraphId="a7d"> <Graphics FontWeight="Bold" FontSize="150" Color="0000ff" CenterX="4500.0" CenterY="10120.0" Width="1730.0" Height="240.0" ZOrder="28672" /> </Label> <Label TextLabel="Extracellular" GraphId="a4c"> <Graphics FontWeight="Bold" FontStyle="Italic" FontSize="150" Color="000000" CenterX="900.0" CenterY="1750.0" Width="1250.0" Height="240.0" ZOrder="28672" /> </Label> <Label TextLabel="Cytoplasm" GraphId="fff"> <Graphics FontWeight="Bold" FontStyle="Italic" FontSize="150" Color="000000" CenterX="800.0" CenterY="2250.0" Width="1055.0" Height="240.0" ZOrder="28672" /> </Label> <Label TextLabel="Nucleus" GraphId="ec5"> <Graphics FontWeight="Bold" FontStyle="Italic" FontSize="150" Color="000000" CenterX="3400.0" CenterY="11700.0" Width="815.0" Height="240.0" ZOrder="28672" /> </Label> <Label TextLabel="Stress Induction of HSP regulation" GraphId="ec3"> <Graphics FontWeight="Bold" FontStyle="Italic" FontSize="210" Color="0000ff" CenterX="11950.0" CenterY="650.0" Width="4535.0" Height="315.0" ZOrder="28672" /> </Label> <Label TextLabel="Cut" GraphId="f84"> <Graphics FontWeight="Bold" FontSize="150" Color="ff00ff" CenterX="10750.0" CenterY="10450.0" Width="395.0" Height="240.0" ZOrder="28672" /> </Label> <Label TextLabel="Inhibition" GraphId="fa7"> <Graphics FontWeight="Bold" FontSize="150" Color="ff0000" CenterX="11050.0" CenterY="10850.0" Width="980.0" Height="240.0" ZOrder="28672" /> </Label> <Label TextLabel="Activate" GraphId="e63"> <Graphics FontWeight="Bold" FontSize="150" Color="000000" CenterX="11000.0" CenterY="11250.0" Width="845.0" Height="240.0" ZOrder="28672" /> </Label> <Label TextLabel="Self-activation" GraphId="b57"> <Graphics FontWeight="Bold" FontSize="150" Color="0000ff" CenterX="11250.0" CenterY="11600.0" Width="1445.0" Height="240.0" ZOrder="28672" /> </Label> <Shape Type="Oval" Style="Solid" GraphId="bde"> <Graphics FillColor="Transparent" Color="000000" CenterX="14750.0" CenterY="3150.0" Width="2200.0" Height="700.0" ZOrder="16384" Rotation="0.0" /> </Shape> <Shape Type="ProteinComplex" Style="Solid" GraphId="bb5"> <Graphics FillColor="Transparent" Color="000000" CenterX="3800.0" CenterY="1450.0" Width="352.9412" Height="0.0" ZOrder="16384" Rotation="0.0" /> </Shape> <Shape Type="Oval" Style="Solid" GraphId="c3f"> <Graphics FillColor="Transparent" Color="000000" CenterX="3550.0" CenterY="9700.0" Width="7000.0" Height="4501.11" ZOrder="16384" Rotation="0.0" /> </Shape> <Shape Type="Rectangle" Style="Solid" GraphId="f12"> <Graphics FillColor="Transparent" Color="000000" CenterX="10700.0" CenterY="11050.0" Width="2901.724" Height="1600.0" ZOrder="16384" Rotation="0.0" /> </Shape> <Group GroupId="d8cbe" GraphId="cd568" /> <Group GroupId="f83c9" GraphId="ea87a" /> <Group GroupId="cf372" GraphId="e2ea3" /> <Group GroupId="cd34f" GraphId="fd904" /> <Group GroupId="b09cd" GraphId="e3700" /> <Group GroupId="af542" GraphId="ccb2c" /> <Group GroupId="fa0db" GraphId="b4a68" /> <Group GroupId="a0cef" GraphId="a8164" /> <Group GroupId="a8427" GraphId="bc10f" /> <Group GroupId="b0a88" GraphId="d8250" /> <InfoBox CenterX="11225.0" CenterY="8775.0" /> <Legend CenterX="12625.0" CenterY="8525.0" /> <Biopax> <bp:PublicationXRef xmlns:bp="http://www.biopax.org/release/biopax-level2.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="c79"> <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">10914538</bp:ID> <bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PubMed</bp:DB> <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Heat shock proteins--modulators of apoptosis in tumour cells.</bp:TITLE> <bp:SOURCE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Leukemia</bp:SOURCE> <bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2000</bp:YEAR> <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Creagh EM</bp:AUTHORS> <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Sheehan D</bp:AUTHORS> <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Cotter TG</bp:AUTHORS> </bp:PublicationXRef> </Biopax> </Pathway> org.pathvisio.core.model.ConverterException: class org.pathvisio.core.model.ConverterException: class org.jdom.JDOMException: Exception in startElement: cvc-id.2: There are multiple occurrences of ID value 'df6'. at org.jdom.output.SAXOutputter.startElement(SAXOutputter.java:1030) at org.jdom.output.SAXOutputter.element(SAXOutputter.java:894) at org.jdom.output.SAXOutputter.elementContent(SAXOutputter.java:1097) at org.jdom.output.SAXOutputter.elementContent(SAXOutputter.java:1069) at org.jdom.output.SAXOutputter.element(SAXOutputter.java:897) at org.jdom.output.SAXOutputter.output(SAXOutputter.java:621) at org.pathvisio.core.model.GpmlFormatAbstract.validateDocument(Unknown Source) at org.pathvisio.core.model.GpmlFormat.readFromXmlImpl(Unknown Source) at org.pathvisio.core.model.GpmlFormat.readFromXml(Unknown Source) at org.pathvisio.core.model.GpmlFormat.doImport(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source) Caused by: org.pathvisio.core.model.ConverterException: class org.jdom.JDOMException: Exception in startElement: cvc-id.2: There are multiple occurrences of ID value 'df6'. ... 12 more Caused by: org.jdom.JDOMException: Exception in startElement: cvc-id.2: There are multiple occurrences of ID value 'df6'. ... 12 more Caused by: org.xml.sax.SAXParseException; cvc-id.2: There are multiple occurrences of ID value 'df6'. at org.apache.xerces.util.ErrorHandlerWrapper.createSAXParseException(Unknown Source) at org.apache.xerces.util.ErrorHandlerWrapper.error(Unknown Source) at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source) at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source) at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source) at org.apache.xerces.impl.xs.XMLSchemaValidator$XSIErrorReporter.reportError(Unknown Source) at org.apache.xerces.impl.xs.XMLSchemaValidator.reportSchemaError(Unknown Source) at org.apache.xerces.impl.xs.XMLSchemaValidator.processOneAttribute(Unknown Source) at org.apache.xerces.impl.xs.XMLSchemaValidator.processAttributes(Unknown Source) at org.apache.xerces.impl.xs.XMLSchemaValidator.handleStartElement(Unknown Source) at org.apache.xerces.impl.xs.XMLSchemaValidator.startElement(Unknown Source) at org.apache.xerces.jaxp.validation.ValidatorHandlerImpl.startElement(Unknown Source) at org.jdom.output.SAXOutputter.startElement(SAXOutputter.java:1027) ... 11 more <BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways/images/b/bb/WP571_38190.gpml" "/var/www/wikipathways/images/0/0b/WP571_38190.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace: #0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio('/var/www/wikipa...', '/var/www/wikipa...') #1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg') #2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg') #3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState)) #4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array) #5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array) #6 /var/www/wikipathways/includes/Article.php(3406): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 38190) #7 /var/www/wikipathways/includes/Article.php(875): Article->outputWikiText('<?xml version="...', false) #8 /var/www/wikipathways/includes/Wiki.php(437): Article->view() #9 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest)) #10 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest)) #11 {main}
