Portal:COVID-19/FeaturedPathways

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{{ #pathwayOfTheDay: {{LOCALDAYNAME}} {{LOCALDAY}} {{LOCALMONTHNAME}} {{LOCALYEAR}} | Curation:COVID19 | true}}
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== SARS-CoV-2 Pathways ==
 +
 
 +
{| style="margin: 10px; background-color:#AFDCDE"
 +
|width=100px; cell padding=50px|{{#pwImage:Pathway:WP4846|250px||SARS-CoV-2 and COVID-19 Pathway}}
 +
Collaborative project for curation of biological processes involved in the COVID-19 disease after SARS-Cov-2 infection.
 +
|width=100px|{{#pwImage:Pathway:WP4860|250px||Hijack of Ubiquitination by SARS-CoV-2}}
 +
SARS-CoV-2 includes a novel Orf10 that interacts with muliple members of the Cullin 2 ubiquitin ligase complex.
 +
|width=100px|{{#pwImage:Pathway:WP4868|250px||Type I Interferon Induction and Signaling During SARS-CoV-2 Infection}}
 +
The induction and signaling of type I interferon with specific SARS-CoV-2 protein and relevant drug.
 +
|width=100px|{{#pwImage:Pathway:WP4927|250px||COVID-19, thrombosis and anticoagulation}}
 +
|-
 +
|}
 +
{| style="margin: 10px; background-color:#AFDCDE"
 +
|width=100px|{{#pwImage:Pathway:WP4876|250px||Activation of NLRP3 Inflammasome by SARS-CoV-2}}
 +
Orf3a from SARS-CoV has been shown to bind TRAF3 and activate the NLRP3 inflammasome.
 +
|width=100px|{{#pwImage:Pathway:WP4883|250px||SARS-CoV-2 and Angiotensin-converting enzyme 2 (ACE2) receptor : Molecular mechanisms and potential therapeutic target}}
 +
|width=100px|{{#pwImage:Pathway:WP4891|250px||COVID-19 AOP}}
 +
Experimental pathway to investigate overlap of virus-host interaction and adverse outcome pathways
 +
|width=100px|{{#pwImage:Pathway:WP4884|250px||nsp9/nsp10-mediated SARS-CoV-2 pathogenesis}}
 +
Virus-host interactome and proteomic survey of PMBCs from COVID-19 patients reveal potential virulence factors influencing SARS-CoV-2 pathogenesis
 +
|-
 +
|}
 +
{| style="margin: 10px; background-color:#AFDCDE"
 +
|width=100px|{{#pwImage:Pathway:WP4904|250px||LDLRAD4 pathway in COVID-19}}
 +
|width=100px|{{#pwImage:Pathway:WP4936|250px||Overview of perturbations to host-cell autophagy, induced by distinct proteins of SARS-CoV-2 (Homo sapiens)}}
 +
|-
 +
|}

Revision as of 19:51, 9 September 2020

SARS-CoV-2 Pathways

invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/c/c7/WP4846_111849.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/c/c7/WP4846_111849.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'SARS-CoV-2 and ...', 'https://classic...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4846', '250px', , 'SARS-CoV-2 and ...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('== SARS-CoV-2 P...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('== SARS-CoV-2 P...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('== SARS-CoV-2 P...', Object(Title), Object(ParserOptions), true, true, 111894)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('== SARS-CoV-2 P...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('== SARS-CoV-2 P...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('== SARS-CoV-2 P...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}

Collaborative project for curation of biological processes involved in the COVID-19 disease after SARS-Cov-2 infection.

invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/f/fe/WP4860_111849.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/f/fe/WP4860_111849.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Hijack of Ubiqu...', 'https://classic...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4860', '250px', , 'Hijack of Ubiqu...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('== SARS-CoV-2 P...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('== SARS-CoV-2 P...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('== SARS-CoV-2 P...', Object(Title), Object(ParserOptions), true, true, 111894)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('== SARS-CoV-2 P...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('== SARS-CoV-2 P...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('== SARS-CoV-2 P...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}

SARS-CoV-2 includes a novel Orf10 that interacts with muliple members of the Cullin 2 ubiquitin ligase complex.

invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/0/0b/WP4868_111849.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/0/0b/WP4868_111849.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Type I Interfer...', 'https://classic...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4868', '250px', , 'Type I Interfer...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('== SARS-CoV-2 P...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('== SARS-CoV-2 P...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('== SARS-CoV-2 P...', Object(Title), Object(ParserOptions), true, true, 111894)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('== SARS-CoV-2 P...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('== SARS-CoV-2 P...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('== SARS-CoV-2 P...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}

The induction and signaling of type I interferon with specific SARS-CoV-2 protein and relevant drug.

invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/7/78/WP4927_111849.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/7/78/WP4927_111849.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'COVID-19, throm...', 'https://classic...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4927', '250px', , 'COVID-19, throm...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('== SARS-CoV-2 P...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('== SARS-CoV-2 P...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('== SARS-CoV-2 P...', Object(Title), Object(ParserOptions), true, true, 111894)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('== SARS-CoV-2 P...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('== SARS-CoV-2 P...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('== SARS-CoV-2 P...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/0/04/WP4876_111849.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/0/04/WP4876_111849.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Activation of N...', 'https://classic...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4876', '250px', , 'Activation of N...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('== SARS-CoV-2 P...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('== SARS-CoV-2 P...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('== SARS-CoV-2 P...', Object(Title), Object(ParserOptions), true, true, 111894)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('== SARS-CoV-2 P...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('== SARS-CoV-2 P...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('== SARS-CoV-2 P...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}

Orf3a from SARS-CoV has been shown to bind TRAF3 and activate the NLRP3 inflammasome.

invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/b/b5/WP4883_111849.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/b/b5/WP4883_111849.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'SARS-CoV-2 and ...', 'https://classic...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4883', '250px', , 'SARS-CoV-2 and ...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('== SARS-CoV-2 P...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('== SARS-CoV-2 P...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('== SARS-CoV-2 P...', Object(Title), Object(ParserOptions), true, true, 111894)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('== SARS-CoV-2 P...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('== SARS-CoV-2 P...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('== SARS-CoV-2 P...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/d/d0/WP4891_111849.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/d/d0/WP4891_111849.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'COVID-19 AOP', 'https://classic...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4891', '250px', , 'COVID-19 AOP')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('== SARS-CoV-2 P...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('== SARS-CoV-2 P...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('== SARS-CoV-2 P...', Object(Title), Object(ParserOptions), true, true, 111894)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('== SARS-CoV-2 P...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('== SARS-CoV-2 P...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('== SARS-CoV-2 P...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}

Experimental pathway to investigate overlap of virus-host interaction and adverse outcome pathways

invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/c/ca/WP4884_111849.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/c/ca/WP4884_111849.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'nsp9/nsp10-medi...', 'https://classic...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4884', '250px', , 'nsp9/nsp10-medi...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('== SARS-CoV-2 P...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('== SARS-CoV-2 P...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('== SARS-CoV-2 P...', Object(Title), Object(ParserOptions), true, true, 111894)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('== SARS-CoV-2 P...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('== SARS-CoV-2 P...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('== SARS-CoV-2 P...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}

Virus-host interactome and proteomic survey of PMBCs from COVID-19 patients reveal potential virulence factors influencing SARS-CoV-2 pathogenesis

invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/e/ed/WP4904_111849.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/e/ed/WP4904_111849.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'LDLRAD4 pathway...', 'https://classic...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4904', '250px', , 'LDLRAD4 pathway...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('== SARS-CoV-2 P...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('== SARS-CoV-2 P...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('== SARS-CoV-2 P...', Object(Title), Object(ParserOptions), true, true, 111894)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('== SARS-CoV-2 P...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('== SARS-CoV-2 P...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('== SARS-CoV-2 P...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/6/69/WP4936_111849.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/6/69/WP4936_111849.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Overview of per...', 'https://classic...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4936', '250px', , 'Overview of per...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('== SARS-CoV-2 P...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('== SARS-CoV-2 P...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('== SARS-CoV-2 P...', Object(Title), Object(ParserOptions), true, true, 111894)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('== SARS-CoV-2 P...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('== SARS-CoV-2 P...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('== SARS-CoV-2 P...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
Retrieved from "https://classic.wikipathways.org/index.php/Portal:COVID-19/FeaturedPathways"
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