WikiPathways

From WikiPathways

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<h2 class="frontPagePanel greenFg">Today's Featured Pathway</h2>{{ #pathwayOfTheDay: {{LOCALDAYNAME}} {{LOCALDAY}} {{LOCALMONTHNAME}} {{LOCALYEAR}} }}
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<h2 class="frontPagePanel greenFg">Today's Featured Pathway</h2>{{ #pathwayOfTheDay: {{LOCALDAYNAME}} {{LOCALDAY}} {{LOCALMONTHNAME}} {{LOCALYEAR}} | Curation:FeaturedPathway | true}}
<h2 class="frontPagePanel greenFg">Latest edits</h2><recentChanges class="greenBg" style="border:none" namespace='102' limit='3'></recentChanges>
<h2 class="frontPagePanel greenFg">Latest edits</h2><recentChanges class="greenBg" style="border:none" namespace='102' limit='3'></recentChanges>
<h2 class="frontPagePanel greenFg">Latest discussions</h2><recentChanges class="greenBg" style="border:none" namespace='90' limit='3'></recentChanges>
<h2 class="frontPagePanel greenFg">Latest discussions</h2><recentChanges class="greenBg" style="border:none" namespace='90' limit='3'></recentChanges>

Revision as of 12:14, 20 February 2009


Welcome to WikiPathways BETA

In the new tradition of Wikipedia, WikiPathways is an open, public platform dedicated to the curation of biological pathways by and for the scientific community. More about WikiPathways...

Finding Pathways

Search{{#googleCoop:}} Browse

Browse by species and category

You can search by:
  • Pathway name (Apoptosis)
  • Gene or protein name (p53)
  • Any page content (cancer)

Contributing New Pathways

Create

Create a new pathway page

Suggest

Add a pathway to the wish list

Sample Pathway Pages

Sandbox

Play with the editor tools

Check out the following pages:

For more information see the Help pages


Today's Featured Pathway

Glycolysis in senescence (Homo sapiens)
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/c/cd/WP5049_28641.svg:
Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/c/cd/WP5049_28641.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Glycolysis in s...', 'https://classic...', 'Glycolysis in s...', 'center', 'pwthumb', '300')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP5049', '300', 'center', 'Glycolysis in s...', 'pathway', 'Glycolysis in s...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPTemplateFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2986): PPFrame_DOM->expand(Object(PPNode_DOM))
  10. 9 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  12. 11 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{{Template:Toda...')
  13. 12 /var/www/wikipathways/includes/parser/Parser.php(439): Parser->internalParse('{{Template:Toda...')
  14. 13 /var/www/wikipathways/wpi/extensions/PathwayOfTheDay/PathwayOfTheDay.php(60): Parser->recursiveTagParse('{{Template:Toda...')
  15. 14 [internal function]: getPathwayOfTheDay(Object(Parser), 'Friday 3 May 20...', 'Curation:Featur...', 'true')
  16. 15 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('getPathwayOfThe...', Array)
  17. 16 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  18. 17 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  19. 18 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('__NOEDITSECTION...')
  20. 19 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('__NOEDITSECTION...')
  21. 20 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('__NOEDITSECTION...', Object(Title), Object(ParserOptions), true, true, 28659)
  22. 21 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('__NOEDITSECTION...', Object(Title), true, true)
  23. 22 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('__NOEDITSECTION...', Object(Title), true)
  24. 23 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('__NOEDITSECTION...')
  25. 24 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  26. 25 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  27. 26 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  28. 27 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  29. 28 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  30. 29 {main}

Latest edits

Today
Oxylipins Pathways (Mus musculus) by Aishwarya Iyer

Latest discussions

No recent changes

New!

  • New species supported:
    • Arabidopsis thaliana
    • Oryza japonica
  • Private pathways (read more)
  • Stable Identifiers for all pathways (read more)

Community Interest

Portals within WikiPathways for communities with focused pathway interests:

Want to start your own Portal? Contact us!

Statistics

  • There are 3169 pathways
  • Number of pathways (and unique genes) per species:
Acetobacterium woodii: 1 (0)
Anopheles gambiae: 20 (400)
Arabidopsis thaliana: 94 (960)
Bacillus subtilis: 3 (14)
Beta vulgaris: 1 (25)
Brassica napus: 2 (162)
Bos taurus: 273 (3739)
Caenorhabditis elegans: 65 (827)
Canis familiaris: 112 (2857)
Caulobacter vibrioides: 1 (0)
Danio rerio: 103 (2664)
Daphnia magna: 2 (0)
Daphnia pulex: 1 (31)
Drosophila melanogaster: 34 (541)
Escherichia coli: 14 (83)
Equus caballus: 12 (200)
Gallus gallus: 100 (2106)
Glycine max: 1 (0)
Gibberella zeae: 2 (0)
Homo sapiens: 1494 (9757)
Hordeum vulgare: 1 (9)
Mus musculus: 237 (5107)
Mycobacterium tuberculosis: 16 (141)
Oryza sativa: 68 (535)
Ovis aries: 1 (0)
Pan troglodytes: 115 (2948)
Populus trichocarpa: 5 (0)
Rattus norvegicus: 175 (3796)
Saccharomyces cerevisiae: 137 (836)
Solanum lycopersicum: 7 (5)
Sus scrofa: 10 (97)
Triticum aestivum: 1 (0)
Vitis vinifera: 1 (0)
Zea mays: 59 (31)
Plasmodium falciparum: 1 (0)
Retrieved from "https://classic.wikipathways.org/index.php/WikiPathways"
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