NAD salvage pathway V (Saccharomyces cerevisiae)

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Description

Nicotinamide adenine dinucleotide (NAD) is an essential cofactor for cellular redox reactions and energy metabolism. NAD also has been shown to be an important substrate in a variety of biological processes, including transcriptional regulation, DNA repair, calcium-dependent signaling pathways, calorie-restriction-mediated life-span extension and age-associated diseases. NAD appears to affect these processes by regulating the Sir2p family of NAD-dependent deacetylases.

In addition to NAD biosynthesis pathways, there are four additional pathways for synthesizing NAD in yeast: two salvage pathways from the vitamin precursor nicotinamide riboside (NR) and two salvage pathways from nicotinic acid riboside (NaR). Three of these salvage pathways converge first with the NAD salvage pathway and then with the de novo pathway, while the fourth, the NR salvage pathway I, is independent of both of these pathways. In the NR salvage pathway I, NR is phosphorylated to nicotinamide mononucleotide by the kinase Nrk1p, and then adenylated to NAD by Nma1p or Nma2p.cYeast have a second NR salvage pathway (NR salvage pathway II) that is independent of Nrk1p; in NR salvage pathway II NR is split into a ribosyl product and nicotinamide, which is subsequently converted to NAD via enzymes of the NAD salvage pathway and de novo pathway. The initial steps in the two NaR salvage pathways are similar to those of the NR salvage pathways and are catalyzed by the same enzymes; Nrk1p catalyzes the first step in the NR and NaR salvage pathways I and Urh1p and Pnp1p catalyze the first steps of the NR and NaR salvage pathways II.

Description adapted from https://pathway.yeastgenome.org/.

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Ontology Terms

 

Bibliography

  1. ''NAD salvage pathway V (PNC V cycle)''; YeastPathways,

History

View all...
CompareRevisionActionTimeUserComment
135961view23:36, 4 December 2024KhanspersModified title
135956view22:34, 3 December 2024KhanspersOntology Term : 'classic metabolic pathway' added !
135955view22:33, 3 December 2024KhanspersModified description
135954view22:30, 3 December 2024Khanspersreduced board height
135953view22:29, 3 December 2024Khanspersremoved GenMAPP comments, updated reference
135952view22:29, 3 December 2024Khanspersoverhaul
117313view11:20, 20 May 2021EweitzModified title
94657view11:19, 4 October 2017DeSlConnected lines, changed name of ribose-5-phosphate to D-ribose-5-phosphate
73683view08:47, 15 February 2014EgonwAdded a bunch of missing metabolite identifiers.
72572view11:18, 23 November 2013EgonwGave more waters a ChEBI ID.
72571view11:17, 23 November 2013EgonwConnected lines.
72570view10:55, 23 November 2013EgonwConverted many labels into Metabolite DataNodes.
69777view12:30, 11 July 2013EgonwConverted niacine into a DataNode.
69770view11:55, 11 July 2013EgonwMarked a few DataNodes with CAS registry numbers as metabolites.
69574view20:28, 8 July 2013MaintBotUpdated to 2013 gpml schema
67504view11:10, 26 June 2013DdiglesOntology Term : 'nicotinamide adenine dinucleotide biosynthesis, the salvage pathway' added !
41793view04:48, 2 March 2011MaintBotRemoved redundant pathway information and comments
21039view11:30, 14 November 2008MaintBot[[Pathway:Saccharomyces cerevisiae:NAD Salvage Pathway]] moved to [[Pathway:WP171]]: Moved to stable identifier
12788view08:02, 17 May 2008MaintBotautomated metabolite conversion
8840view14:10, 7 January 2008MaintBotAdded to category $category
8838view14:10, 7 January 2008M.BraymerUploaded new pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
2''-O-acetyl-ADP-riboseMetaboliteCHEBI:83767 (ChEBI)
5-phospho-α-D-ribose 1-diphosphateMetabolite58017 (ChEBI)
ADPMetabolite58-64-0 (CAS)
AMPMetaboliteCHEBI:456215 (ChEBI)
ATPMetabolite1927-31-7 (CAS)
H+MetaboliteCHEBI:15378 (ChEBI)
H2OMetaboliteCHEBI:15377 (ChEBI)
L-glutamateMetaboliteCHEBI:29985 (ChEBI)
L-glutamineMetabolite58359 (ChEBI)
NAD de novo biosynthesis II (from tryptophan)Pathway
NAD salvage pathway IV (from nicotinamide riboside)Pathway
NADMetaboliteCHEBI:15846 (ChEBI)
NH3MetaboliteCHEBI:16134 (ChEBI)
NMA1GeneProductS000004320 (SGD)
NMA2GeneProductS000003242 (SGD)
NPT1GeneProductS000005735 (SGD)
PNC1GeneProductS000003005 (SGD)
QNS1GeneProductS000001116 (SGD)
SIR2GeneProductS000002200 (SGD)
a [histone]-L-lysineMetaboliteC02415 (KEGG Compound)
a [histone]-N6-acetyl-L-lysineMetabolite
nicotinamide riboside salvage pathway IIPathway
nicotinamideMetabolite98-92-0 (CAS)
nicotinate adenine dinucleotideMetaboliteCHEBI:58437 (ChEBI)
nicotinate riboside salvage pathway IPathway
nicotinate riboside salvage pathway IIPathway
nicotinateMetaboliteCHEBI:32544 (ChEBI)
phosphateMetabolite14265-44-2 (CAS)
pyrophosphateMetabolite2466-09-3 (CAS)
β-nicotinate D-ribonucleotide Metabolite57502 (ChEBI)

Annotated Interactions

No annotated interactions

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