Urea cycle and metabolism of amino groups (Rattus norvegicus)

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ArcPathVisio Brace Ellipse EndoplasmicReticulum GolgiApparatus HexagonPathVisio MimDegradation Mitochondria Octagon PentagonPathVisio Rectangle RoundedRectangle SarcoplasmicReticulum TriangleEquilateralEast TrianglePathVisio none GuanidinoacetateL-GlutamylAmino acid metabolismD-Arg and D-ornithine metabolismSpermineL-GlutamatePyrimidine metabolismC03406NH3N2-Acetyl-L-ornithineN-Acetyl-L-glutamateL-CitrullineArginineFormaldehydeN-Acetyl-L-glutamateN-MethylhydantoinPhosphoguanidinoacetateCarbamoyl-PL-AspartateCO2Nitrogen metabolismPutrescineCreatineL-OrnithineL-ProlineN-CarbamoylsarcosineGlutamate metabolismCitrate cycle (TCA cycle)Pro metabolismN-Acetyl-glutamatePurine metabolismFormate(S)-1-Pyrroline-5-carboxylateArginine metabolismSpermidineUrea-1-carboxylatecreatine-PSarcosineFumarateUreaAla and aspartate metabolismCreatinineL-Glutamate-5-semialdehydeGatmPycrl2.7.2.83.5.3.3LOC363469AslGamt1.2.1.463.5.2.10AssAcy1Pycs3.5.1.163.5.1.54SrmOtc3.5.1.59OatCps13.5.4.21LOC3634691.2.1.383.5.2.141.5.99.13.5.1.52.3.1.35Pycr12.7.3.12.6.1.69Pycs2.6.1.11GeneProductGlud1Odc16.3.4.6GeneProductNagsCkmCkbArg2Arg1Name: Urea cycle and metabolism of amino groupsOrganism: Rattus norvegicus


Description

GenMAPP notes: link to original KEGG map in comments is broken, correct link: http://www.kegg.jp/kegg-bin/show_pathway?rno00220

Comments

GenMAPP notes 
Link to original KEGG map: http://www.genome.ad.jp/dbget-bin/show pathway?rno00220
GenMAPP remarks 
Eddited by Sebastien Burel

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Quality Tags

Image:NeedsRef.pngAdd references
Image:MissingXref.pngAnnotate nodes
Image:Unconnected.pngFix interactions

Ontology Terms

Bibliography

No bibliography


History

View all...
CompareRevisionActionTimeUserComment
109430view09:51, 17 March 2020L DupuisConnected line
109408view18:05, 16 March 2020L DupuisFixed interactions
107236view14:33, 17 September 2019MaintBotChEBI identifier normalization
93711view12:08, 11 August 2017DeSlAdded 3 IDs for previously not annotated nodes.
93710view12:02, 11 August 2017DeSlAdded more connectivity between nodes.
93709view11:56, 11 August 2017DeSlTried to connect all the nodes for this PW; lines were hidden under the nodes :(
93706view11:37, 11 August 2017DeSlAdded IDs for not annotated metabolite nodes, changed appearence of several nodes.
93704view10:56, 11 August 2017DeSlModified description
79705view08:09, 6 April 2015EgonwReplaced a gene name with its Entrez Gene identifier.
79704view08:06, 6 April 2015EgonwConverted more labels to metabolite DataNode's.
77392view11:30, 5 September 2014EgonwAdded a bunch of ChemSpider identifiers for metabolites with IUPAC names.
77391view11:18, 5 September 2014EgonwReplace a bunch of Labels for metabolites with Metabolite DataNodes (without IDs).
72184view07:32, 27 October 2013EgonwConverted a bunch of labels to Metabolite DataNodes, and cleaned up arrows.
72141view09:59, 25 October 2013Mkutmonadded annotation of EC numbers
67800view19:42, 26 June 2013EgonwConnected some dots.
67739view11:57, 26 June 2013DdiglesOntology Term : 'urea cycle pathway' added !
41771view02:42, 2 March 2011MaintBotRemoved redundant pathway information and comments
21003view11:30, 14 November 2008MaintBot[[Pathway:Rattus norvegicus:Urea cycle and metabolism of amino groups KEGG]] moved to [[Pathway:WP153]]: Moved to stable identifier
8480view13:46, 7 January 2008MaintBot[[Pathway:Rat:Urea cycle and metabolism of amino groups KEGG]] moved to [[Pathway:Rattus norvegicus:Urea cycle and metabolism of amino groups KEGG]]: Renaming species
7856view16:23, 18 December 2007MaintBotfixed category names
7415view12:42, 4 November 2007MaintBotAdded categories to GPML
6608view22:20, 22 May 2007L.M.Ferrantegpml file for [[Rat:Urea_cycle_and_metabolism_of_amino_groups_KEGG]]

External references

DataNodes

View all...
Name  ↓Type  ↓Database reference  ↓Comment  ↓
(S)-1-Pyrroline-5-carboxylateMetabolite10140206 (Chemspider) (S)-1-Pyrroline-5-carboxylate
1.2.1.38GeneProduct1.2.1.38 (Enzyme Nomenclature)
1.2.1.46GeneProduct1.2.1.46 (Enzyme Nomenclature)
1.5.99.1GeneProduct1.5.99.1 (Enzyme Nomenclature)
2.3.1.35GeneProduct2.3.1.35 (Enzyme Nomenclature)
2.6.1.11GeneProduct2.6.1.11 (Enzyme Nomenclature)
2.6.1.69GeneProduct2.6.1.69 (Enzyme Nomenclature)
2.7.2.8GeneProduct2.7.2.8 (Enzyme Nomenclature)
2.7.3.1GeneProduct2.7.3.1 (Enzyme Nomenclature)
3.5.1.16GeneProduct3.5.1.16 (Enzyme Nomenclature)
3.5.1.5GeneProduct3.5.1.5 (Enzyme Nomenclature)
3.5.1.54GeneProduct3.5.1.54 (Enzyme Nomenclature)
3.5.1.59GeneProduct3.5.1.59 (Enzyme Nomenclature)
3.5.2.10GeneProduct3.5.2.10 (Enzyme Nomenclature)
3.5.2.14GeneProduct3.5.2.14 (Enzyme Nomenclature)
3.5.3.3GeneProduct3.5.3.3 (Enzyme Nomenclature)
3.5.4.21GeneProduct3.5.4.21 (Enzyme Nomenclature)
6.3.4.6GeneProduct6.3.4.6 (Enzyme Nomenclature)
Acy1GeneProduct300981 (Entrez Gene)
Ala and aspartate metabolismPathway
Amino acid metabolismPathway
Arg1GeneProduct29221 (Entrez Gene)
Arg2GeneProduct29215 (Entrez Gene)
Arginine metabolismPathway
ArginineMetabolite227 (Chemspider) L-Arginine
AslGeneProduct59085 (Entrez Gene)
AssGeneProduct25698 (Entrez Gene)
C03406MetaboliteC03406 (KEGG Compound) N-(L-Arginino)succinate
CO2Metabolite280 (PubChem-compound) CO2
Carbamoyl-PMetaboliteCHEBI:17672 (ChEBI) Carbamoyl
Citrate cycle (TCA cycle)Pathway
CkbGeneProduct24264 (Entrez Gene)
CkmGeneProduct24265 (Entrez Gene)
Cps1GeneProduct24956 (Entrez Gene)
CreatineMetabolite566 (Chemspider) Creatine
CreatinineMetaboliteCHEBI:16737 (ChEBI) Creatinine
D-Arg and D-ornithine metabolismPathway
FormaldehydeMetabolite692 (Chemspider) Formaldehyde
FormateMetabolite277 (Chemspider) Formate
FumarateMetabolite144248 (Chemspider) Fumarate
GamtGeneProduct25257 (Entrez Gene)
GatmGeneProduct81660 (Entrez Gene)
GeneProductGeneProduct
Glud1GeneProduct24399 (Entrez Gene)
Glutamate metabolismPathway
GuanidinoacetateMetabolite10707243 (Chemspider) Guanidinoacetate
L-AspartateMetabolite3714789 (Chemspider) L-Aspartate
L-CitrullineMetabolite810 (Chemspider) L-Citrulline
L-Glutamate- 5-semialdehydeMetaboliteCHEBI:17232 (ChEBI)
L-GlutamateMetabolite4302384 (Chemspider) L-Glutamate
L-GlutamylMetaboliteC20949 (KEGG Compound) L-Glutamyl
L-OrnithineMetabolite380 (Chemspider) L-Ornithine
L-ProlineMetaboliteCHEBI:17203 (ChEBI) L-Proline
LOC363469GeneProduct363469 (Entrez Gene)
N-Acetyl-L-glutamateMetabolite10626897 (Chemspider) N-Acetyl-L-glutamate
N-Acetyl-glutamateMetabolite10626897 (Chemspider) N-Acetyl-L-glutamate
N-CarbamoylsarcosineMetabolite388495 (Chemspider) N-Carbamoylsarcosine
N-MethylhydantoinMetabolite62430 (Chemspider) N-Methylhydantoin
N2-Acetyl-L-ornithineMetabolite439232 (PubChem-compound) N2-Acetyl-L-ornithine
NH3Metabolite222 (PubChem-compound) NH3
NagsGeneProduct303563 (Entrez Gene) LOC303563 or RGD1565783
Nitrogen metabolismPathway
OatGeneProduct64313 (Entrez Gene)
Odc1GeneProduct24609 (Entrez Gene)
OtcGeneProduct25611 (Entrez Gene)
PhosphoguanidinoacetateMetabolite19992631 (Chemspider) Phosphoguanidinoacetate
Pro metabolismPathway
Purine metabolismPathway
PutrescineMetabolite13837702 (Chemspider) Putrescine
Pycr1GeneProduct287877 (Entrez Gene)
PycrlGeneProduct300035 (Entrez Gene)
PycsGeneProduct361755 (Entrez Gene)
Pyrimidine metabolismPathway
SarcosineMetabolite1057 (Chemspider) Sarcosine
SpermidineMetabolite1071 (Chemspider) Spermidine
SpermineMetabolite1072 (Chemspider) Spermine
SrmGeneProduct84596 (Entrez Gene)
Urea-1-carboxylateMetabolite9543250 (PubChem-compound) Urea-1-carboxylate
UreaMetabolite1143 (Chemspider) Urea
creatine-PMetabolite9548602 (PubChem-compound) Phosphocreatine

Annotated Interactions

No annotated interactions
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