Plant primary metabolism (Arabidopsis thaliana)

From WikiPathways

Sacha Bohler, Egon Willighagen, Toshiaki TOKIMATSU, Anwesha Bohler, et al.

Description

Plant Primary Metabolism Metapathway

Contains:

- Calvin Cycle (chloroplast) - Glycolysis (cytosol) - Krebs Cycle (mitochondria) - Chloroplastic Amino Acid Metabolism - Chloroplast Electron Transport Chain - Sucrose Metabolism - Starch Metabolism

The pathway is currently under construction and does not yet contain A. thaliana annotations.

Try the New WikiPathways

View approved pathways at the new wikipathways.org.

Quality Tags

hide

Annotate nodes

Needs work

Fix interactions

Ontology Terms

No Tags!

Bibliography

Karve A, Rauh BL, Xia X, Kandasamy M, Meagher RB, Sheen J, Moore BD; ''Expression and evolutionary features of the hexokinase gene family in Arabidopsis.''; Planta, 2008 PubMed Europe PMC Scholia

History

View all...

Revision	Action	Time	User	Comment
117248	view	09:59, 19 May 2021	Eweitz	Modified title
111815	view	19:09, 8 September 2020	Egonw	Matched the data source with the given identifier.
105896	view	11:36, 16 August 2019	Mkutmon	HMDB identifier normalization
102643	view	07:49, 16 January 2019	Tokimatsu	Reverted to version '2018年3月5日 (月) 08:39' by Tokimatsu
102642	view	07:47, 16 January 2019	Tokimatsu	Fix interactions
102641	view	07:40, 16 January 2019	Tokimatsu	Fixed connections.
102640	view	07:26, 16 January 2019	Tokimatsu	remove reactions/metabolites undiscovered from Brassicaceae. Add reaction IDs.
102639	view	07:19, 16 January 2019	Tokimatsu	remove reactions/metabolites undiscovered from Brassicaceae. Add reaction IDs.
96282	view	08:39, 5 March 2018	Egonw	Not a chemical conversion.
82871	view	16:28, 10 November 2015	Jmelius	Correct outdated id
78382	view	10:22, 7 January 2015	MaintBot	added missing graphIds
76240	view	08:49, 21 June 2014	Sbohler	Grouped cytosolic malic enzymes 1, 2, and 3.
76235	view	06:19, 20 June 2014	Sbohler	Coorected myrosinase annotations (vacuole)
76234	view	15:37, 19 June 2014	Anwesha	Annotated some nodes
75849	view	09:02, 11 June 2014	Sbohler	Modified description
75847	view	04:59, 11 June 2014	Egonw	Added two more missing metabolite IDs.
75846	view	04:50, 11 June 2014	Egonw	Added missing database names for two protein IDs.
75331	view	14:45, 19 May 2014	Sbohler	Moved apoplastic protein out of the cell border.
75330	view	14:42, 19 May 2014	Sbohler	Parts added to the pathway, including RNA for PLC1,2, NAD-ME1,2, NADP-ME2.
74123	view	20:17, 31 March 2014	Egonw	Removed the list of Uniprot identifiers from the Xref, which can hold only one.
74122	view	20:16, 31 March 2014	Egonw	Copied the multiple identifiers to the comment field.
71812	view	18:17, 18 October 2013	Egonw	Added a bunch of missing metabolite identifiers.
71448	view	19:14, 17 October 2013	MaintBot	Automated update of data sources
65321	view	18:01, 6 June 2013	Sbohler	Periodical save, work in progress
65316	view	17:51, 6 June 2013	Sbohler	work in progress
65312	view	17:40, 6 June 2013	Sbohler	Periodical save, work in progress
65024	view	21:00, 4 June 2013	MaintBot	Ontology Term : 'glycolysis pathway' added !
65023	view	21:00, 4 June 2013	MaintBot	Ontology Term : 'Krebs cycle pathway' added !
65022	view	20:59, 4 June 2013	MaintBot	Modified categories
62875	view	12:56, 3 May 2013	Sbohler	Modified description
62874	view	12:54, 3 May 2013	Sbohler	Modified description
62873	view	12:50, 3 May 2013	Sbohler	New pathway

External references

DataNodes

View all...

Name	Type	Database reference
1,3-bisphosphoglycerate	Metabolite
2,3-dihydroxy-3-methylvalerate	Metabolite	HMDB0012140 (HMDB)
2,3-dihydroxy-isovalerate	Metabolite	HMDB0012141 (HMDB)
2,6-diaminopimelate	Metabolite
2-Acetolactate	Metabolite	HMDB0006855 (HMDB)
2-aceto-2-hydroxybutanoate	Metabolite
2-cys peroxiredoxin-like protein	Protein	Q9C5R8 (Uniprot-TrEMBL)
2-oxo-3-methylvalerate	Metabolite	CHEBI:28654 (ChEBI)
2-oxo-isovalerate	Metabolite	49 (PubChem-compound)
2-oxobutanoate	Metabolite
2-oxoglutarate	Metabolite
2-oxoglutarate dehydrogenase	Protein	F4IWV2 (Uniprot-TrEMBL)
2-oxoglutarate dehydrogenase	Protein	Q9FLH2 (Uniprot-TrEMBL)
2-phosphoglycolate	Metabolite
2H+	Metabolite
3-phosphoglycerate	Metabolite
30S ribosomal protein S5	Protein	P93014 (Uniprot-TrEMBL)
5-amino-levulinate	Metabolite
5-methyltetrahydropteroyltri glutamate	Metabolite
ADP	Metabolite
ADP-glucose pyrophosphorylase LSU1	Protein	P55229 (Uniprot-TrEMBL)
ADP-glucose pyrophosphorylase LSU2	Protein	P55230 (Uniprot-TrEMBL)
ADP-glucose pyrophosphorylase LSU3	Protein	P55231 (Uniprot-TrEMBL)
ADP-glucose pyrophosphorylase SSU	Protein	P55228 (Uniprot-TrEMBL)
ADP-glucose	Metabolite	HMDB0006557 (HMDB)
ADP	Metabolite	C00008 (KEGG Compound)
ATP-dependent phosphofructokinase 1	Protein	Q9M0F9 (Uniprot-TrEMBL)
ATP-dependent phosphofructokinase 2	Protein	Q9FIK0 (Uniprot-TrEMBL)
ATP-dependent phosphofructokinase 3	Protein	Q94AA4 (Uniprot-TrEMBL)
ATP-dependent phosphofructokinase 6	Protein	Q9M076 (Uniprot-TrEMBL)
ATP-dependent phosphofructokinase 7	Protein	Q9C5J7 (Uniprot-TrEMBL)
ATP	Metabolite	HMDB0000538 (HMDB)
Acetyl-CoA	Metabolite
Acetyl-CoA	Metabolite	HMDB0001206 (HMDB)
CO2	Metabolite
CO2	Metabolite
CO2	Metabolite	HMDB0001967 (HMDB)
Calvin Cycle	Pathway
CoA	Metabolite
Cystathionine	Metabolite	HMDB0000099 (HMDB)
Cysteine and Methionine Biosynthesis	Pathway
Cysteine	Metabolite	HMDB0000574 (HMDB)
Dihydroxyacetone phosphate	Metabolite	HMDB0001473 (HMDB)
FAD+	Metabolite	HMDB0001248 (HMDB)
FADH2	Metabolite	HMDB0001197 (HMDB)
Glutamate Biosynthesis	Pathway
Glycolysis	Pathway
H+	Metabolite
H2CO3	Metabolite
H2O	Metabolite
H2O + O2	Metabolite
H2O2	Metabolite
H2O	Metabolite	HMDB0002111 (HMDB)
HCO3-	Metabolite
HS	Metabolite
Homocysteine	Metabolite	HMDB0000742 (HMDB)
Isoleucine	Metabolite	HMDB0000172 (HMDB)
Lysine Biosynthesis	Pathway
Methionine	Metabolite	HMDB0000696 (HMDB)
NAD+	Metabolite	HMDB0000902 (HMDB)
NADH	Metabolite	HMDB0001487 (HMDB)
NADP+	Metabolite	HMDB0000217 (HMDB)
NADP+	Metabolite	HMDB0000902 (HMDB)
NADPH	Metabolite	HMDB0000221 (HMDB)
NADPH	Metabolite	HMDB0001487 (HMDB)
NH3	Metabolite
O-acetyl-L-serine	Metabolite
O2	Metabolite
O2 + H+	Metabolite
PPi	Metabolite
PPi-dependent phosphofructokinase alpha 1	Protein	Q9SYP2 (Uniprot-TrEMBL)
PPi-dependent phosphofructokinase alpha 2	Protein	Q9C9K3 (Uniprot-TrEMBL)
PPi-dependent phosphofructokinase beta 1	Protein	Q8W4M5 (Uniprot-TrEMBL)
PPi-dependent phosphofructokinase beta 2	Protein	F4JGR5 (Uniprot-TrEMBL)
Photorespiration	Pathway
Pi	Metabolite
Porphyrin and Chlorophyll metabolism	Pathway
RuBisCO LSU	Protein	O03042 (Uniprot-TrEMBL)
RuBisCO SSU1A	Protein	P10795 (Uniprot-TrEMBL)
RuBisCO SSU1B	Protein	P10796 (Uniprot-TrEMBL)
RuBisCO SSU2B	Protein	P10797 (Uniprot-TrEMBL)
RuBisCO SSU3B	Protein	P10798 (Uniprot-TrEMBL)
RuBisCO activase	Protein	P10896 (Uniprot-TrEMBL)
Serine	Metabolite	HMDB0000187 (HMDB)
Starch Metabolism	Pathway
Succinyl-CoA	Metabolite	HMDB0001022 (HMDB)
Sucrose Metabolism	Pathway
TCA Cycle (Krebs Cycle)	Pathway
Thylakoid lumenal 19 kDa protein	Protein	P82658 (Uniprot-TrEMBL)
UDP	Metabolite
UDP-glucose	Metabolite
UDP-glucose pyrophosphorylase 1	Protein	P57751 (Uniprot-TrEMBL)
UDP-glucose pyrophosphorylase 2	Protein	Q9M9P3 (Uniprot-TrEMBL)
UTP	Metabolite
Valine and Isoleucine Biosynthesis	Pathway
Valine	Metabolite	HMDB0000883 (HMDB)
acetate	Metabolite
acetolactate synthase LSU	Protein	P17597 (Uniprot-TrEMBL)
acetolactate synthase SSU 1	Protein	Q9FFF4 (Uniprot-TrEMBL)
acetolactate synthase SSU 2	Protein	Q93YZ7 (Uniprot-TrEMBL)
aconitase 1	Protein	Q42560 (Uniprot-TrEMBL)
aconitase 2	Protein	Q9SIB9 (Uniprot-TrEMBL)
aconitase 3	Protein	Q94A28 (Uniprot-TrEMBL)
aldolase 1	Protein	O65581 (Uniprot-TrEMBL)
aldolase 2	Protein	Q944G9 (Uniprot-TrEMBL)
amylase 1	Protein	Q9LIR6 (Uniprot-TrEMBL)
aspartate	Metabolite
branched-chain-amino-acid transaminase 2	Protein	Q9M439 (Uniprot-TrEMBL)
branched-chain-amino-acid transaminase 3	Protein	Q9M401 (Uniprot-TrEMBL)
branched-chain-amino-acid transaminase 5	Protein	Q9FYA6 (Uniprot-TrEMBL)
carbonic anhydrase 1	Protein	P27140 (Uniprot-TrEMBL)
carbonic anhydrase 2	Protein	P42737 (Uniprot-TrEMBL)
citrate	Metabolite
citrate synthase 4	Protein	P20115 (Uniprot-TrEMBL)
citrate synthase 5	Protein	Q9M1D3 (Uniprot-TrEMBL)
copper chaperone	Protein	O82089 (Uniprot-TrEMBL)
cystathionine beta-lyase	Protein	P53780 (Uniprot-TrEMBL)
cystathionine gamma-lyase	Protein	F4K5T2 (Uniprot-TrEMBL)
cysteine proteinase inhibitor 2	Protein	Q8L5T9 (Uniprot-TrEMBL)
cysteine proteinase inhibitor 3	Protein	Q41906 (Uniprot-TrEMBL)
cysteine proteinase inhibitor 4	Protein	Q84WT8 (Uniprot-TrEMBL)
cysteine proteinase inhibitor 5	Protein	Q41916 (Uniprot-TrEMBL)
cysteine proteinase inhibitor 6	Protein	Q8H0X6 (Uniprot-TrEMBL)
cysteine synthase	Protein	P47999 (Uniprot-TrEMBL)
diaminopimelate decarboxylase 1	Protein	Q949X7 (Uniprot-TrEMBL)
diaminopimelate decarboxylase 2	Protein	Q94A94 (Uniprot-TrEMBL)
diaminopimelate epimerase	Protein	Q9LFG2 (Uniprot-TrEMBL)
dihydroxy-acid dehydratase	Protein	AT3G23940 (Ensembl)
elongation factor EF-G/SCO1	Protein	AT1G62750 (Ensembl)
enolase 2	Protein	P25696 (Uniprot-TrEMBL)
enolase 3	Protein	Q9ZW34 (Uniprot-TrEMBL)
erythrose 4-phosphate	Metabolite	HMDB0001321 (HMDB)
ferredoxin 1	Protein	O04090 (Uniprot-TrEMBL)
ferredoxin 2	Protein	P16972 (Uniprot-TrEMBL)
ferredoxin 3	Protein	Q9ZQG8 (Uniprot-TrEMBL)
ferredoxin-NADP+ reductase 1	Protein	Q9FKW6 (Uniprot-TrEMBL)
ferredoxin-NADP+ reductase 2	Protein	Q8W493 (Uniprot-TrEMBL)
fructose 1,6-bisphosphate aldolase	Protein	P22197 (Uniprot-TrEMBL)
fructose 1,6-bisphosphate	Metabolite	HMDB0001058 (HMDB)
fructose 6-phosphate	Metabolite	HMDB0000124 (HMDB)
fructose-1,6-bisphosphatase	Protein	P25851 (Uniprot-TrEMBL)
fructose-1,6-bisphosphate	Metabolite	HMDB0001058 (HMDB)
fructose	Metabolite	HMDB0000660 (HMDB)
fumarase	Protein	P93033 (Uniprot-TrEMBL)
fumarate	Metabolite
glucan endo-1,3-beta-glucosidase acidic isoform	Protein	P33157 (Uniprot-TrEMBL)
glucose 1-phosphate	Metabolite	HMDB0001586 (HMDB)
glucose 6-phosphate	Metabolite	HMDB0001401 (HMDB)
glucose-6-phosphate isomerase 1	Protein	Q8H103 (Uniprot-TrEMBL)
glucose-6-phosphate isomerase	Protein	P34795 (Uniprot-TrEMBL)
glucose	Metabolite	HMDB0000122 (HMDB)
glutamate	Metabolite
glutamate-1-semialdehyde	Metabolite
glutamate-1-semialdehyde 2,1-aminomutase 1	Protein	P42799 (Uniprot-TrEMBL)
glutamate-1-semialdehyde 2,1-aminomutase 2	Protein	Q42522 (Uniprot-TrEMBL)
glutamate-tRNA ligase	Protein	Q9FEA2 (Uniprot-TrEMBL)
glutamyl-tRNA (Glu)	Metabolite
glutamyl-tRNA reductase 1	Protein	P42804 (Uniprot-TrEMBL)
glutamyl-tRNA reductase 2	Protein	P49294 (Uniprot-TrEMBL)
glutamyl-tRNA reductase 3	Protein	Q9SJX1 (Uniprot-TrEMBL)
glutaredoxin-C5	Protein	Q8GWS0 (Uniprot-TrEMBL)
glutaredoxin-S14	Protein	Q84Y95 (Uniprot-TrEMBL)
glutaredoxin-S16	Protein	Q8H7F6 (Uniprot-TrEMBL)
glutathione S-transferase F12	Protein	Q9FE46 (Uniprot-TrEMBL)
glutathione S-transferase F2	Protein	P46422 (Uniprot-TrEMBL)
glutathione S-transferase F3	Protein	Q9SLM6 (Uniprot-TrEMBL)
glutathione S-transferase F9	Protein	O80852 (Uniprot-TrEMBL)
glutathione disulfide	Metabolite
glutathione reductase	Protein	P42770 (Uniprot-TrEMBL)
glutathione-S-transferase F10	Protein	P42761 (Uniprot-TrEMBL)
glutathione-S-transferase F11	Protein	Q96324 (Uniprot-TrEMBL)
glutathione-S-transferase F13	Protein	Q9LZI9 (Uniprot-TrEMBL)
glutathione-S-transferase F14	Protein	Q9C6C8 (Uniprot-TrEMBL)
glutathione-S-transferase F4	Protein	Q84TK0 (Uniprot-TrEMBL)
glutathione-S-transferase F5	Protein	Q9SRY6 (Uniprot-TrEMBL)
glutathione-S-transferase F6	Protein	P42760 (Uniprot-TrEMBL)
glutathione-S-transferase F7	Protein	Q9SRY5 (Uniprot-TrEMBL)
glutathione	Metabolite	HMDB0000125 (HMDB)
glyceraldahyde-3-phosphate	Metabolite
glyceraldehyde 3-phosphate dehydrogenase 1	Protein	P25858 (Uniprot-TrEMBL)
glyceraldehyde 3-phosphate dehydrogenase 2	Protein	Q9FX54 (Uniprot-TrEMBL)
glyceraldehyde-3-phosphate dehydrogenase 1	Protein	P25856 (Uniprot-TrEMBL)
glyceraldehyde-3-phosphate dehydrogenase 2	Protein	Q9LPW0 (Uniprot-TrEMBL)
glycerate 1,3-bisphosphate	Metabolite
glycerate 2-phosphate	Metabolite
glycerate 3-phosphate	Metabolite
glycine-rich RNA-binding protein 7	Protein	Q03250 (Uniprot-TrEMBL)
heat shock cognate 70 kDa protein 1	Protein	P22953 (Uniprot-TrEMBL)
hexokinase 2	Protein	P93834 (Uniprot-TrEMBL)
hexokinase 3	Protein	Q9LPS1 (Uniprot-TrEMBL)
invertase 1	Protein	Q9LQF2 (Uniprot-TrEMBL)
invertase 2	Protein	Q67XD9 (Uniprot-TrEMBL)
isocitrate	Metabolite
isocitrate dehydrogenase 1	Protein	Q8LFC0 (Uniprot-TrEMBL)
isocitrate dehydrogenase 2	Protein	P93032 (Uniprot-TrEMBL)
isocitrate dehydrogenase 3	Protein	O81796 (Uniprot-TrEMBL)
isocitrate dehydrogenase 4	Protein	Q9LQK9 (Uniprot-TrEMBL)
isocitrate dehydrogenase 5	Protein	Q945K7 (Uniprot-TrEMBL)
isocitrate dehydrogenase 6	Protein	Q8LG77 (Uniprot-TrEMBL)
isocitrate dehydrogenase	Protein	Q9SRZ6 (Uniprot-TrEMBL)
ketol-acid reductoisomerase	Protein	Q05758 (Uniprot-TrEMBL)
lipoxygenase 1	Protein	Q06327 (Uniprot-TrEMBL)
lipoxygenase 2	Protein	P38418 (Uniprot-TrEMBL)
lipoxygenase 3	Protein	Q9LNR3 (Uniprot-TrEMBL)
lipoxygenase 4	Protein	Q9FNX8 (Uniprot-TrEMBL)
lipoxygenase 5	Protein	Q9LUW0 (Uniprot-TrEMBL)
lipoxygenase 6	Protein	Q9CAG3 (Uniprot-TrEMBL)
luminal-binding protein 1	Protein	Q9LKR3 (Uniprot-TrEMBL)
luminal-binding protein 2	Protein	Q39043 (Uniprot-TrEMBL)
lysine	Metabolite	HMDB0000182 (HMDB)
malate	Metabolite
malate dehydrogenase 1	Protein	P93819 (Uniprot-TrEMBL)
malate dehydrogenase 1	Protein	Q9ZP06 (Uniprot-TrEMBL)
malate dehydrogenase 2	Protein	P57106 (Uniprot-TrEMBL)
malate dehydrogenase 2	Protein	Q9LKA3 (Uniprot-TrEMBL)
malic enzyme 1	Protein	O82191 (Uniprot-TrEMBL)
malic enzyme 1	Protein	Q9SIU0 (Uniprot-TrEMBL)
malic enzyme 2	Protein	Q8L7K9 (Uniprot-TrEMBL)
malic enzyme 2	Protein	Q9LYG3 (Uniprot-TrEMBL)
malic enzyme 3	Protein	Q9XGZ0 (Uniprot-TrEMBL)
meso-2,6-diaminopimelate	Metabolite
methionine synthase 3	Protein	Q0WNZ5 (Uniprot-TrEMBL)
myrosinase 1	Protein	P37702 (Uniprot-TrEMBL)
myrosinase 2	Protein	Q9C5C2 (Uniprot-TrEMBL)
myrosinase 3	Protein	Q3E8E5 (Uniprot-TrEMBL)
myrosinase 4	Protein	Q8GRX1 (Uniprot-TrEMBL)
myrosinase 5	Protein	Q3ECS3 (Uniprot-TrEMBL)
myrosinase 6	Protein	Q9C8K1 (Uniprot-TrEMBL)
oxaloacetate	Metabolite
peroxiredoxin-2E	Protein	Q949U7 (Uniprot-TrEMBL)
phosphoenolpyruvate	Metabolite
phosphoenolpyruvate carboxylase 1	Protein	Q9MAH0 (Uniprot-TrEMBL)
phosphoenolpyruvate carboxylase 2	Protein	Q5GM68 (Uniprot-TrEMBL)
phosphoenolpyruvate carboxylase 3	Protein	Q84VW9 (Uniprot-TrEMBL)
phosphoenolpyruvate carboxylase 4	Protein	Q8GVE8 (Uniprot-TrEMBL)
phosphoglucomutase 1	Protein	O49299 (Uniprot-TrEMBL)
phosphoglucomutase 2	Protein	Q9SGC1 (Uniprot-TrEMBL)
phosphoglucomutase	Protein	Q9SCY0 (Uniprot-TrEMBL)
phosphoglycerate kinase 1	Protein	Q9LD57 (Uniprot-TrEMBL)
phosphoglycerate kinase 2	Protein	P50318 (Uniprot-TrEMBL)
phosphoglycerate kinase	Protein	Q9SAJ4 (Uniprot-TrEMBL)
phosphoglycerate mutase 1	Protein	O04499 (Uniprot-TrEMBL)
phosphoglycerate mutase 2	Protein	Q9M9K1 (Uniprot-TrEMBL)
phosphoribulokinase	Protein	P25697 (Uniprot-TrEMBL)
plastocyanin 1	Protein	P11490 (Uniprot-TrEMBL)
plastocyanin 2	Protein	P42699 (Uniprot-TrEMBL)
plastoquinone	Metabolite
pyruvate	Metabolite
pyruvate dehydrogenase alpha-1	Protein	P52901 (Uniprot-TrEMBL)
pyruvate dehydrogenase alpha-2	Protein	Q8H1Y0 (Uniprot-TrEMBL)
pyruvate dehydrogenase beta-1	Protein	Q38799 (Uniprot-TrEMBL)
pyruvate dehydrogenase	Protein	O24457 (Uniprot-TrEMBL)
pyruvate kinase	Protein	Q94KE3 (Uniprot-TrEMBL)
pyruvate kinase	Protein	Q9FFP6 (Uniprot-TrEMBL)
pyruvate kinase	Protein	Q9FNN1 (Uniprot-TrEMBL)
pyruvate kinase	Protein	Q9LU95 (Uniprot-TrEMBL)
pyruvate kinase	Protein	Q9M044 (Uniprot-TrEMBL)
pyruvate kinase	Protein	Q9M057 (Uniprot-TrEMBL)
pyruvate kinase	Protein	Q9SJQ0 (Uniprot-TrEMBL)
pyruvate kinase	Protein	Q9SQQ7 (Uniprot-TrEMBL)
ribonucleoprotein	Protein	Q9ZUU4 (Uniprot-TrEMBL)
ribose 5-phosphate	Metabolite	HMDB0001548 (HMDB)
ribulose 5-phosphate 3-epimerase	Protein	Q9SAU2 (Uniprot-TrEMBL)
ribulose 5-phosphate isomerase 3	Protein	Q9S726 (Uniprot-TrEMBL)
ribulose 5-phosphate isomerase 4	Protein	Q9FI13 (Uniprot-TrEMBL)
ribulose 5-phosphate	Metabolite	HMDB0000618 (HMDB)
ribulose-1,5-bisphosphate	Metabolite
sedoheptulose 1,7-bisphosphatase	Protein	P46283 (Uniprot-TrEMBL)
sedoheptulose 1,7-bisphosphate	Metabolite
sedoheptulose 7-phosphate	Metabolite	HMDB0001068 (HMDB)
serine acetyltransferase 1	Protein	Q42588 (Uniprot-TrEMBL)
serine racemase	Protein	Q2PGG3 (Uniprot-TrEMBL)
small subunit ribosomal protein S1	Protein	Q93VC7 (Uniprot-TrEMBL)
starch	Metabolite
starch phosphorylase	Protein	Q9LIB2 (Uniprot-TrEMBL)
starch synthase 1	Protein	Q9FNF2 (Uniprot-TrEMBL)
starch synthase 2	Protein	Q9MAC8 (Uniprot-TrEMBL)
starch synthase 3	Protein	F4IAG2 (Uniprot-TrEMBL)
succinate	Metabolite
succinate dehydrogenase 1	Protein	O82663 (Uniprot-TrEMBL)
succinate dehydrogenase 2	Protein	Q9ZPX5 (Uniprot-TrEMBL)
succinate dehydrogenase FeS 1	Protein	Q8LBZ7 (Uniprot-TrEMBL)
succinate dehydrogenase FeS 2	Protein	Q8LB02 (Uniprot-TrEMBL)
succinate dehydrogenase FeS 3	Protein	Q9FJP9 (Uniprot-TrEMBL)
succinyl-CoA synthetase alpha-1	Protein	P68209 (Uniprot-TrEMBL)
succinyl-CoA synthetase alpha-2	Protein	Q8LAD2 (Uniprot-TrEMBL)
succinyl-CoA synthetase beta	Protein	O82662 (Uniprot-TrEMBL)
sucrose synthase 1	Protein	Q94BT0 (Uniprot-TrEMBL)
sucrose synthase 2	Protein	Q00917 (Uniprot-TrEMBL)
sucrose synthase 3	Protein	Q9M111 (Uniprot-TrEMBL)
sucrose synthase 4	Protein	Q9LXL5 (Uniprot-TrEMBL)
sucrose synthase 5	Protein	F4K5W8 (Uniprot-TrEMBL)
sucrose synthase 6	Protein	Q9FX32 (Uniprot-TrEMBL)
sucrose	Metabolite	HMDB0000258 (HMDB)
tRNA(Glu)	Metabolite
tetrahydropteroyltri glutamate	Metabolite
thioredoxin reductase 3	Protein	O22229 (Uniprot-TrEMBL)
thioredoxin	Protein	IPR013766 (InterPro)
transketolase 1	Protein	Q8RWV0 (Uniprot-TrEMBL)
transketolase 2	Protein	F4IW47 (Uniprot-TrEMBL)
triose phosphate isomerase	Protein	P48491 (Uniprot-TrEMBL)
triose phosphate isomerase	Protein	Q9SKP6 (Uniprot-TrEMBL)
xyluloase-5-phosphate	Metabolite