Vitamin A and carotenoid metabolism (Homo sapiens)

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ArcPathVisio Brace Ellipse EndoplasmicReticulum GolgiApparatus HexagonPathVisio MimDegradation Mitochondria Octagon PentagonPathVisio Rectangle RoundedRectangle SarcoplasmicReticulum TriangleEquilateralEast TrianglePathVisio none LegendchylomicronROL: RetinolRA: Retinoic acidRE: Retinyl esterRPE: Retinal pigment epitheliumNuclearreceptors?Cytochrome P450 familyBloodDiet?RE + dietary lipidsRhodopsin formation??RA-binding proteinsROL-binding proteinsLiver / other organsRE + dietary lipidsEnterocyteRE + dietary lipids?11-cis binding proteinGap junction communicationPPAR pathways?Retinal pigment epithelium specificNucleusBetacaroteneBCO1DGAT1LRATAWAT2RBP7ALDH1A1ALDH1A2ALDH1A3RARARXRBRXRARARGRXRGRARBABCG8RetinolVitamin ARDH12RDH5RDH12DHRS3CYP26B1CYP2E1CYP26A14-oxo-13,14-dihydroretinoic acid4-oxo-Retinoic acidNPC1L1ALDH1A3ABCG511-cis-RetinolLPLAll-trans retinolvitamin ABeta-cryptoxanthinRPE65BCO2MAPKZeaxanthinLutein11-cis-RetinalBetacaroteneSCARB1LycopeneRetinyl esterSULT2B1All-trans retinalAll-trans-13,14-dihydroretinol9-cis-RetinalRDH10RETSATRBP1ADH4Vitamin D3SULT1A1All-trans retinoic acidVitamin A acidBCO1CD36ViolaxanthinALDH1A213,14 dihydroretinalCanthaxanthinSCARB113,14-dihydroretinoic acid9-cis-Retinoic acidAstaxanthinLRATALDH1A1RDH5RDH8ADH1A9-cis-RetinolCRABP2CRABP1RLBP1Alpha-caroteneRetinolVitamin ABeta 10' apocarotenalBetacaroteneRBP2Retinyl esterBCO1RBP4RetinalVitamin A aldehydeBetacaroteneSDR16C5Name: Vitamin A and carotenoid metabolismOrganism: Homo sapiens


Description

This pathway is about carotenoid and vitamin A metabolism. The initial version was created by the NuGO focusteam on Carotenoid metabolism. It was used to test a text mining workflow which added some additional entities (see Waagmeester et al. 2009 [[1](https://www.ncbi.nlm.nih.gov/pubmed/19715393])).

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Quality Tags

Image:Curated.pngApproved version
Image:Featured.pngFeatured version
Image:Wplogo_31.pngCommunity: Micronutrients
Image:Wplogo_31.pngCommunity: Lipids and LIPID MAPS

Ontology Terms

Bibliography

View all...
  1. Czeczuga-Semeniuk E, Wolczynski S, Markiewicz W; ''Preliminary identification of carotenoids in malignant and benign neoplasms of the breast and surrounding fatty tissue.''; Neoplasma, 2003 PubMed Europe PMC Scholia
  2. Huet F, Semama D, Maingueneau C, Charavel A, Nivelon JL; ''Vitamin A deficiency and nocturnal vision in teenagers with cystic fibrosis.''; Eur J Pediatr, 1997 PubMed Europe PMC Scholia
  3. Johansson S, Melhus H; ''Vitamin A antagonizes calcium response to vitamin D in man.''; J Bone Miner Res, 2001 PubMed Europe PMC Scholia
  4. VandenLangenberg GM, Brady WE, Nebeling LC, Block G, Forman M, Bowen PE, Stacewicz-Sapuntzakis M, Mares-Perlman JA; ''Influence of using different sources of carotenoid data in epidemiologic studies.''; J Am Diet Assoc, 1996 PubMed Europe PMC Scholia
  5. Bendich A, Olson JA; ''Biological actions of carotenoids.''; FASEB J, 1989 PubMed Europe PMC Scholia
  6. Micozzi MS, Brown ED, Edwards BK, Bieri JG, Taylor PR, Khachik F, Beecher GR, Smith JC Jr; ''Plasma carotenoid response to chronic intake of selected foods and beta-carotene supplements in men.''; Am J Clin Nutr, 1992 PubMed Europe PMC Scholia
  7. Sun Y, Ng L, Lam W, Lo CK, Chan PT, Yuen YL, Wong PF, Tsang DS, Cheung WT, Lee SS; ''Identification and characterization of a novel mouse peroxisome proliferator-activated receptor alpha-regulated and starvation-induced gene, Ppsig.''; Int J Biochem Cell Biol, 2008 PubMed Europe PMC Scholia
  8. Amir H, Karas M, Giat J, Danilenko M, Levy R, Yermiahu T, Levy J, Sharoni Y; ''Lycopene and 1,25-dihydroxyvitamin D3 cooperate in the inhibition of cell cycle progression and induction of differentiation in HL-60 leukemic cells.''; Nutr Cancer, 1999 PubMed Europe PMC Scholia
  9. Khachik F, Beecher GR, Goli MB, Lusby WR, Smith JC Jr; ''Separation and identification of carotenoids and their oxidation products in the extracts of human plasma.''; Anal Chem, 1992 PubMed Europe PMC Scholia
  10. Sies H, Stahl W, Sundquist AR; ''Antioxidant functions of vitamins. Vitamins E and C, beta-carotene, and other carotenoids.''; Ann N Y Acad Sci, 1992 PubMed Europe PMC Scholia
  11. Torma H, Rollman O, Binderup L, Michaelsson G; ''Vitamin D analogs affect the uptake and metabolism of retinol by human epidermal keratinocytes in culture.''; J Investig Dermatol Symp Proc, 1996 PubMed Europe PMC Scholia
  12. Hidiroglou M, Williams CJ; ''Interrelationships among liposoluble vitamins in ruminants.''; Am J Vet Res, 1986 PubMed Europe PMC Scholia
  13. Balmer JE, Blomhoff R; ''Gene expression regulation by retinoic acid.''; J Lipid Res, 2002 PubMed Europe PMC Scholia
  14. Olmedilla B, Granado F, Blanco I, Rojas-Hidalgo E; ''Seasonal and sex-related variations in six serum carotenoids, retinol, and alpha-tocopherol.''; Am J Clin Nutr, 1994 PubMed Europe PMC Scholia
  15. Boosalis MG, Snowdon DA, Tully CL, Gross MD; ''Acute phase response and plasma carotenoid concentrations in older women: findings from the nun study.''; Nutrition, 1996 PubMed Europe PMC Scholia
  16. Waagmeester A, Pezik P, Coort S, Tourniaire F, Evelo C, Rebholz-Schuhmann D; ''Pathway enrichment based on text mining and its validation on carotenoid and vitamin A metabolism.''; OMICS, 2009 PubMed Europe PMC Scholia
  17. Moise AR, Kuksa V, Blaner WS, Baehr W, Palczewski K; ''Metabolism and transactivation activity of 13,14-dihydroretinoic acid.''; J Biol Chem, 2005 PubMed Europe PMC Scholia
  18. Handelman GJ, Dratz EA, Reay CC, van Kuijk JG; ''Carotenoids in the human macula and whole retina.''; Invest Ophthalmol Vis Sci, 1988 PubMed Europe PMC Scholia
  19. Ruhl CE, Everhart JE; ''Relation of elevated serum alanine aminotransferase activity with iron and antioxidant levels in the United States.''; Gastroenterology, 2003 PubMed Europe PMC Scholia
  20. Moise AR, Kuksa V, Imanishi Y, Palczewski K; ''Identification of all-trans-retinol:all-trans-13,14-dihydroretinol saturase.''; J Biol Chem, 2004 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
138417
Approved
Featured
view21:56, 6 April 2025EweitzFix truncated text
138274view22:29, 27 March 2025EweitzRemoved unused abbreviation
138273view22:27, 27 March 2025EweitzAdd legend
138272view22:23, 27 March 2025EweitzRefine alignment
138271view22:09, 27 March 2025EweitzAlign nodes
138270view22:07, 27 March 2025EweitzEconomize layout
138269view22:04, 27 March 2025EweitzEconomize layout
138268view22:01, 27 March 2025EweitzStandardize case
138267view12:10, 27 March 2025EweitzOntology Term : 'retinal pigment epithelial cell' added !
138266view12:09, 27 March 2025EweitzFix truncated text, standardize case
138265view12:05, 27 March 2025EweitzFix truncated text, standard case
138264view11:58, 27 March 2025EweitzUse gene symbols, standardize case
138263view11:46, 27 March 2025EweitzUse gene symbols, standardize case
138262view11:37, 27 March 2025EweitzIncrease font size
137459view14:47, 2 March 2025EgonwModified description
134153
Micronutrients
view11:57, 15 July 2024EgonwMarked a few interactions as mim-translocation
128717view01:34, 21 February 2024EweitzOntology Term : 'enterocyte' added !
126219
Lipids
view15:04, 16 April 2023EgonwLicense is CCZero
124885view14:15, 22 December 2022Conroy lipidsadd missing identifiers, some Rhea, literature ref
124880view13:05, 20 December 2022Conroy lipidsadd missing metabolite identifier, begin conversion of arrows to mim-conversion, add some Rhea IDs to reactions
116512view10:46, 7 May 2021EweitzModified title
110181view14:27, 23 April 2020EgonwOntology Term : 'retinol metabolic pathway' added !
106146view12:04, 16 August 2019MaintBotHMDB identifier normalization
103270view12:37, 20 February 2019DeSlModified description
97560view07:17, 25 May 2018Fehrhartfixed connections
83589view10:59, 26 November 2015EgonwAdded a reference for the function of Retsat.
79968view15:43, 28 April 2015ZariChanged Enzyme ID to Entrez gene
74442view07:24, 20 April 2014EgonwFixed a PubMed ID.
71992view11:21, 24 October 2013MkutmonChanged Unknown -> GeneProduct for Scarb1
71370view18:37, 17 October 2013MaintBotAutomated update of data sources
70757view20:29, 5 September 2013MaintBotadded datanode Type to Sult1a1
70756view20:28, 5 September 2013MaintBotadded datanode Types for missing entries
70033view01:59, 12 July 2013AlexanderPicoModified title
68936view17:34, 8 July 2013MaintBotUpdated to 2013 gpml schema
68052view12:32, 29 June 2013EgonwFixed EC number data sources.
67744view11:57, 26 June 2013DdiglesOntology Term : 'vitamin A and metabolites signaling pathway' added !
59134view22:37, 21 February 2013MaintBotUpdated Ensembl and UniProt data source
52902view09:57, 24 October 2012AnweshaPeriodical save, work in progress
46094view03:31, 15 December 2011AlexanderPicoconverted hugo to ensembl
46090view02:28, 15 December 2011AllanKuchinskyupdated HGNC IDs
45017view18:32, 6 October 2011KhanspersOntology Term : 'metabolic pathway of cofactors and vitamins' added !
41087view23:21, 1 March 2011MaintBotRemoved redundant pathway information and comments
38841view17:39, 24 September 2010KhanspersChanged nucleus
38356view07:17, 2 September 2010ThomasReverted to version '11:08, 17 May 2010' by Thomas
38355view07:16, 2 September 2010ThomasPeriodical save, work in progress
37110view11:08, 17 May 2010SusanAdd connection
37109view11:07, 17 May 2010SusanAdd Awat2
37108view10:45, 17 May 2010SusanAdd Awat
37107view10:28, 17 May 2010SusanAdd connection
37106view10:21, 17 May 2010EveloCorrected typo in title

External references

DataNodes

View all...
Name  ↓Type  ↓Database reference  ↓Comment  ↓
11-cis-RetinalMetaboliteHMDB0002152 (HMDB)
11-cis-RetinolMetaboliteHMDB0006216 (HMDB)
13,14 dihydroretinalMetaboliteLMPR01090067 (LIPID MAPS)
13,14-dihydroretinoic acidMetaboliteLMPR01090066 (LIPID MAPS)
4-oxo-13,14-dihydroretinoic acidMetaboliteLMPR01090068 (LIPID MAPS)
4-oxo-Retinoic acidMetaboliteHMDB0006285 (HMDB)
9-cis-RetinalMetaboliteHMDB0006218 (HMDB)
9-cis-Retinoic acidMetaboliteLMPR01090065 (LIPID MAPS)
9-cis-RetinolMetaboliteHMDB0006217 (HMDB)
ABCG5GeneProduct64240 (Entrez Gene)
ABCG8GeneProduct64241 (Entrez Gene)
ADH1AGeneProduct124 (Entrez Gene) "Adh1" originally
ADH4GeneProduct127 (Entrez Gene)
ALDH1A1GeneProduct216 (Entrez Gene)
ALDH1A2GeneProduct8854 (Entrez Gene)
ALDH1A3GeneProduct220 (Entrez Gene)
AWAT2GeneProduct158835 (Entrez Gene) "Awat" originally
All-trans retinalMetaboliteHMDB0001358 (HMDB)
All-trans retinoic acid Vitamin A acidMetaboliteHMDB0001852 (HMDB)
All-trans retinol vitamin AMetaboliteHMDB0000305 (HMDB)
All-trans-13,14-dihydroretinolMetaboliteLMPR01090047 (LIPID MAPS)
Alpha-caroteneMetaboliteHMDB0003993 (HMDB)
AstaxanthinMetaboliteHMDB0002204 (HMDB)
BCO1GeneProduct53630 (Entrez Gene) "Bcmo1" originally
BCO2GeneProduct83875 (Entrez Gene) "Bcdo2" originally
Beta 10' apocarotenalMetaboliteLMPR01071053 (LIPID MAPS)
Beta-cryptoxanthinMetaboliteHMDB0002268 (HMDB)
BetacaroteneMetaboliteHMDB0000561 (HMDB)
CD36GeneProduct948 (Entrez Gene)
CRABP1GeneProduct1381 (Entrez Gene)
CRABP2GeneProduct1382 (Entrez Gene)
CYP26A1GeneProduct1592 (Entrez Gene)
CYP26B1GeneProduct56603 (Entrez Gene)
CYP2E1GeneProduct1571 (Entrez Gene)
CanthaxanthinMetaboliteHMDB0003154 (HMDB)
DGAT1Protein8694 (Entrez Gene) "ARAT" originally
DHRS3GeneProduct9249 (Entrez Gene)
LPLGeneProduct4023 (Entrez Gene)
LRATGeneProductENSG00000121207 (Ensembl)
LuteinMetaboliteHMDB0003233 (HMDB)
LycopeneMetaboliteHMDB0003000 (HMDB)
MAPKGeneProduct5594 (Entrez Gene)
NPC1L1GeneProduct29881 (Entrez Gene)
RARAGeneProduct5914 (Entrez Gene)
RARBGeneProduct5915 (Entrez Gene)
RARGGeneProduct5916 (Entrez Gene)
RBP1GeneProduct5947 (Entrez Gene)
RBP2GeneProduct5948 (Entrez Gene)
RBP4GeneProduct5950 (Entrez Gene)
RBP7GeneProduct116362 (Entrez Gene)
RDH10GeneProduct157506 (Entrez Gene)
RDH12GeneProduct145226 (Entrez Gene)
RDH5GeneProduct5959 (Entrez Gene)
RDH8GeneProduct50700 (Entrez Gene)
RETSATGeneProduct54884 (Entrez Gene)
RLBP1GeneProduct6017 (Entrez Gene)
RPE65GeneProduct6121 (Entrez Gene)
RXRAGeneProduct6256 (Entrez Gene)
RXRBGeneProduct6257 (Entrez Gene)
RXRGGeneProduct6258 (Entrez Gene)
Retinal Vitamin A aldehydeMetaboliteHMDB0001358 (HMDB)
Retinol Vitamin AMetaboliteHMDB0000305 (HMDB)
Retinyl esterMetaboliteHMDB0003598 (HMDB)
SCARB1GeneProduct949 (Entrez Gene)
SDR16C5GeneProduct195814 (Entrez Gene) "Retinol dehydrogenases" originally
SULT1A1GeneProduct6817 (Entrez Gene)
SULT2B1GeneProduct6820 (Entrez Gene)
ViolaxanthinMetaboliteHMDB0003101 (HMDB)
Vitamin D3MetaboliteHMDB0000876 (HMDB)
ZeaxanthinMetaboliteHMDB0002789 (HMDB)

Annotated Interactions

View all...
Source  ↓Target  ↓Type  ↓Database reference  ↓Comment  ↓
9-cis-Retinal9-cis-Retinoic acidmim-conversion42085 (Rhea)
All-trans retinalAll-trans retinoic acid Vitamin A acidmim-conversion42081 (Rhea)
All-trans retinol vitamin A9-cis-Retinolmim-conversion55349 (Rhea)
All-trans retinol vitamin AAll-trans-13,14-dihydroretinolmim-conversion19195 (Rhea)
BetacaroteneAll-trans retinalmim-conversion32888 (Rhea)
BetacaroteneBeta 10' apocarotenalmim-conversion26390 (Rhea)
BetacaroteneRetinal Vitamin A aldehydemim-conversion32888 (Rhea)
Retrieved from "https://classic.wikipathways.org/index.php/Pathway:WP716"
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