Help:PathwayStyling
From WikiPathways
(Difference between revisions)
Current revision (21:47, 17 March 2023) (view source) (added titles to the last two) |
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| - | == | + | == Styling WikiPathways Models == |
| - | A showcase of WikiPathways models styled | + | A showcase of WikiPathways models styled to produce images comparable to original static figures. You can model and then style any biological process, starting from a published figure or your own research results. Visualization tools like [http://www.cytoscape.org Cytoscape] can also be used to perform data-driven styling. |
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| + | === PDGFR-beta and ovarian cancer survival === | ||
| + | (Zhang, ''Cell'' 2016) [http://www.ncbi.nlm.nih.gov/pubmed/27372738 PubMed] | ||
| + | |||
| + | |||
| + | {| | ||
| + | |[[Image:PDGFR-beta_pathway.png|border|500px|WikiPathways styled in Cytoscape]] | ||
| + | | | ||
| + | {| | ||
| + | {{#imgLink:WP3972_92088.png|thumb|center |WikiPathways model|pathway|WP3972|WikiPathways model}} | ||
| + | |- | ||
| + | |[[Image:PDGFR-beta_original.png|thumb|Original figure]] | ||
| + | |} | ||
| + | |} | ||
| + | |||
| + | ---- | ||
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=== NAD⁺ in aging, metabolism, and neurodegeneration === | === NAD⁺ in aging, metabolism, and neurodegeneration === | ||
(Verdin, ''Science'' 2015) [http://www.ncbi.nlm.nih.gov/pubmed/26785480 PubMed] | (Verdin, ''Science'' 2015) [http://www.ncbi.nlm.nih.gov/pubmed/26785480 PubMed] | ||
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{| | {| | ||
| - | |[[Image:NAD-biosynthetic-pathways_CS.png|border|500px|WikiPathways in Cytoscape]] | + | |[[Image:NAD-biosynthetic-pathways_CS.png|border|500px|WikiPathways styled in Cytoscape]] |
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{| | {| | ||
| - | {{#imgLink:WP3645_85725.png|thumb|center|WikiPathways model|pathway|WP3645|WikiPathways model}} | + | {{#imgLink:WP3645_85725.png|thumb|center |WikiPathways model|pathway|WP3645|WikiPathways model}} |
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|[[Image:NAD_publication.png|thumb|Original figure]] | |[[Image:NAD_publication.png|thumb|Original figure]] | ||
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{| | {| | ||
| - | |[[Image:WP_Styling_Help_TCACycleCancer.png|600px|border|WikiPathways in Cytoscape]] | + | |[[Image:WP_Styling_Help_TCACycleCancer.png|600px|border|WikiPathways styled in Cytoscape]] |
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{| | {| | ||
| - | |{{#imgLink:WP2868_78079.png|thumb|center|WikiPathways model|pathway|WP2868|WikiPathways model}} | + | |{{#imgLink:WP2868_78079.png|thumb|center |WikiPathways model|pathway|WP2868|WikiPathways model}} |
|- | |- | ||
|[[Image:TCACycleCancer_original.jpg|thumb|Original figure]] | |[[Image:TCACycleCancer_original.jpg|thumb|Original figure]] | ||
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| - | (Zhang et al, "Cell" 2013) [http://www.ncbi.nlm.nih.gov/pubmed/23622250] | + | === Integrated systems approach identifies genetic nodes and networks in late-onset Alzheimer's disease === |
| + | (Zhang et al, "Cell" 2013) [http://www.ncbi.nlm.nih.gov/pubmed/23622250 PubMed] | ||
{| | {| | ||
| - | |[[Image:TYROBP_export.png|600px|border|WikiPathways in Cytoscape]] | + | |[[Image:TYROBP_export.png|600px|border|WikiPathways styled in Cytoscape]] |
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{| | {| | ||
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| + | === From systems to structure: bridging networks and mechanism === | ||
| + | (Fraser et al, "Mol. Cell." 2013) [http://www.ncbi.nlm.nih.gov/pubmed/23352243 PubMed] | ||
| + | |||
| + | |||
| + | {| | ||
| + | |[[Image:DualHijackModel_HIV.png|600px|border|WikiPathways styled in Cytoscape]] | ||
| + | | | ||
| + | {| | ||
| + | |{{#imgLink:WP3300_85021.png|thumb|center|WikiPathways model|pathway|WP3300|WikiPathways model}} | ||
| + | |- | ||
| + | |[[Image:DualHijack_original.png|thumb|Original figure]] | ||
| + | |} | ||
| + | |} | ||
Current revision
Styling WikiPathways Models
A showcase of WikiPathways models styled to produce images comparable to original static figures. You can model and then style any biological process, starting from a published figure or your own research results. Visualization tools like Cytoscape can also be used to perform data-driven styling.
PDGFR-beta and ovarian cancer survival
(Zhang, Cell 2016) PubMed
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|
NAD⁺ in aging, metabolism, and neurodegeneration
(Verdin, Science 2015) PubMed
|
|
Metabolic shifts toward glutamine regulate tumor growth, invasion and bioenergetics in ovarian cancer
(Yang, Mol Syst Biol 2014) PubMed
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|
Integrated systems approach identifies genetic nodes and networks in late-onset Alzheimer's disease
(Zhang et al, "Cell" 2013) PubMed
|
|
From systems to structure: bridging networks and mechanism
(Fraser et al, "Mol. Cell." 2013) PubMed
|
|
