Help:PathwayStyling

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Current revision (21:47, 17 March 2023) (view source)
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== Publication-Quality Images via WikiPathways ==
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== Styling WikiPathways Models ==
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A showcase of WikiPathways models styled in Cytoscape to produce publication-quality images that are comparable to original static figures. You can model and then style any biological process, starting from a published figure or your own research results.  
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A showcase of WikiPathways models styled to produce images comparable to original static figures. You can model and then style any biological process, starting from a published figure or your own research results. Visualization tools like [http://www.cytoscape.org Cytoscape] can also be used to perform data-driven styling.  
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=== PDGFR-beta and ovarian cancer survival ===
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(Zhang, ''Cell'' 2016) [http://www.ncbi.nlm.nih.gov/pubmed/27372738 PubMed]
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{|
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|[[Image:PDGFR-beta_pathway.png|border|500px|WikiPathways styled in Cytoscape]]
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{{#imgLink:WP3972_92088.png|thumb|center |WikiPathways model|pathway|WP3972|WikiPathways model}}
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|[[Image:PDGFR-beta_original.png|thumb|Original figure]]
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=== NAD⁺ in aging, metabolism, and neurodegeneration ===
=== NAD⁺ in aging, metabolism, and neurodegeneration ===
(Verdin, ''Science'' 2015) [http://www.ncbi.nlm.nih.gov/pubmed/26785480 PubMed]
(Verdin, ''Science'' 2015) [http://www.ncbi.nlm.nih.gov/pubmed/26785480 PubMed]
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  |[[Image:NAD-biosynthetic-pathways_CS.png|border|500px|WikiPathways in Cytoscape]]
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  |[[Image:NAD-biosynthetic-pathways_CS.png|border|500px|WikiPathways styled in Cytoscape]]
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{{#imgLink:WP3645_85725.png|thumb|center|WikiPathways model|pathway|WP3645|WikiPathways model}}
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{{#imgLink:WP3645_85725.png|thumb|center |WikiPathways model|pathway|WP3645|WikiPathways model}}
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|[[Image:NAD_publication.png|thumb|Original figure]]
|[[Image:NAD_publication.png|thumb|Original figure]]
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  |[[Image:WP_Styling_Help_TCACycleCancer.png|600px|border|WikiPathways in Cytoscape]]
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  |[[Image:WP_Styling_Help_TCACycleCancer.png|600px|border|WikiPathways styled in Cytoscape]]
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|{{#imgLink:WP2868_78079.png|thumb|center|WikiPathways model|pathway|WP2868|WikiPathways model}}
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|{{#imgLink:WP2868_78079.png|thumb|center |WikiPathways model|pathway|WP2868|WikiPathways model}}
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|[[Image:TCACycleCancer_original.jpg|thumb|Original figure]]
|[[Image:TCACycleCancer_original.jpg|thumb|Original figure]]
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(Zhang et al, "Cell" 2013) [http://www.ncbi.nlm.nih.gov/pubmed/23622250]
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=== Integrated systems approach identifies genetic nodes and networks in late-onset Alzheimer's disease ===
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(Zhang et al, "Cell" 2013) [http://www.ncbi.nlm.nih.gov/pubmed/23622250 PubMed]
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  |[[Image:TYROBP_export.png|600px|border|WikiPathways in Cytoscape]]
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  |[[Image:TYROBP_export.png|600px|border|WikiPathways styled in Cytoscape]]
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(Fraser et al, "Mol. Cell." 2013) [http://www.ncbi.nlm.nih.gov/pubmed/23352243]
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=== From systems to structure: bridging networks and mechanism ===
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(Fraser et al, "Mol. Cell." 2013) [http://www.ncbi.nlm.nih.gov/pubmed/23352243 PubMed]
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  |[[Image:DualHijackModel_HIV.png|600px|border|WikiPathways in Cytoscape]]
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  |[[Image:DualHijackModel_HIV.png|600px|border|WikiPathways styled in Cytoscape]]
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Current revision

Contents

Styling WikiPathways Models

A showcase of WikiPathways models styled to produce images comparable to original static figures. You can model and then style any biological process, starting from a published figure or your own research results. Visualization tools like Cytoscape can also be used to perform data-driven styling.


PDGFR-beta and ovarian cancer survival

(Zhang, Cell 2016) PubMed


WikiPathways styled in Cytoscape
Original figure
Original figure

NAD⁺ in aging, metabolism, and neurodegeneration

(Verdin, Science 2015) PubMed


WikiPathways styled in Cytoscape
Original figure
Original figure



Metabolic shifts toward glutamine regulate tumor growth, invasion and bioenergetics in ovarian cancer

(Yang, Mol Syst Biol 2014) PubMed

WikiPathways styled in Cytoscape
Original figure
Original figure



Integrated systems approach identifies genetic nodes and networks in late-onset Alzheimer's disease

(Zhang et al, "Cell" 2013) PubMed

WikiPathways styled in Cytoscape
Original figure
Original figure



From systems to structure: bridging networks and mechanism

(Fraser et al, "Mol. Cell." 2013) PubMed


WikiPathways styled in Cytoscape
Original figure
Original figure
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