Methylerythritol phosphate pathway (Oryza sativa)

From WikiPathways

Revision as of 20:43, 20 January 2013 by Egonw (Talk | contribs)
Jump to: navigation, search
NADPH2-C-methyl-D-erythritol-4-phosphateLOC_Os06g05100EC:1.1.1.267NADP+LOC_Os07g36190LOC_Os02g39160pyruvate1-deoxy-D-xylulose 5-phosphateCMPEC:2.2.1.7LOC_Os05g33840ATPdimethylallyl-PPLOC_Os02g45660H2OLOC_Os05g34180Δ3-isopentenyl-PPADPCO2protein disulfidepolyisoprenoid biosynthesisLOC_Os01g66360diphosphate4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritolEC:5.3.3.21-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphateLOC_Os07g09190D-glyceraldehyde-3-phosphate2-C-methyl-D-erythritol-2,4-cyclodiphosphateLOC_Os01g58790phytyl-PP biosynthesisLOC_Os03g52170geranylgeranyldiphosphate biosynthesis II (plastidic)EC:2.7.7.60protein dithiolLOC_Os01g01710EC:1.17.1.2EC:2.7.1.148EC:1.17.4.3EC:4.6.1.12LOC_Os07g40260CTP2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritolNAD(P)+NAD(P)HH2OH+


Description

In plants, the 2-C-methyl-d-erythritol 4-phosphate (MEP) pathway located in the plastids provides precursors for the isoprenoid hormones, monoterpenes, carotenoids and chlorophyll side chains, prenylquinones and tocopherol biosynthesis.

Try the New WikiPathways

View approved pathways at the new wikipathways.org.

Quality Tags

Ontology Terms

 

Bibliography

No bibliography


History

View all...
CompareRevisionActionTimeUserComment
123064view04:00, 23 June 2022EgonwMade a pathway clickable
98196view10:19, 5 August 2018EgonwReplaced the CAS number of a salt with that of the parent compound.
94568view06:49, 28 September 2017DeSlAnnotated metabolite node; changed 2 metabolite nodes to proteins, changed ID for NAD(P)H to correct one.
89689view10:07, 26 September 2016EgonwReplace the CAS number of the salt with that of just the metabolite.
86878view07:46, 14 July 2016MkutmonOntology Term : 'tetrahydrobiopterin metabolic pathway' added !
86877view07:46, 14 July 2016MkutmonOntology Term : 'PW:0000217' removed !
71857view20:33, 18 October 2013EgonwFixed the KEGG Compound database name.
70139view20:57, 12 July 2013MaintBotupdated to 2013 schema
57085view20:43, 20 January 2013EgonwAdded missing CAS data source.
48985view22:51, 2 July 2012PjaiswalModified categories
48635view22:06, 7 June 2012PjaiswalModified description
48634view22:02, 7 June 2012PjaiswalOntology Term : 'plant cell' added !
48633view22:02, 7 June 2012PjaiswalOntology Term : 'metabolic pathway of prosthetic groups, electron carriers and reductants' added !
48632view22:00, 7 June 2012Pjaiswaladded xref to EC:1.17.4.3
48630view21:42, 7 June 2012PjaiswalNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
1-deoxy-D-xylulose 5-phosphateMetaboliteC11437 (Kegg Compound)
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphateMetaboliteC11811 (Kegg Compound)
2-C-methyl-D-erythritol-2,4-cyclodiphosphateMetaboliteC11453 (Kegg Compound)
2-C-methyl-D-erythritol-4-phosphateMetaboliteC11434 (Kegg Compound)
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritolMetabolite
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritolMetaboliteC11435 (Kegg Compound)
ADPMetabolite58-64-0 (CAS)
ATPMetabolite56-65-5 (CAS)
CMPMetabolite63-37-6 (CAS)
CO2Metabolite124-38-9 (CAS)
CTPMetabolite65-47-4 (CAS)
D-glyceraldehyde-3-phosphateMetabolite142-10-9 (CAS)
EC:1.1.1.267GeneProduct1.1.1.267 (EC Number)
EC:1.17.1.2GeneProduct1.17.1.2 (EC Number)
EC:1.17.4.3GeneProduct1.17.4.3 (EC Number)
EC:2.2.1.7GeneProduct2.2.1.7 (EC Number)
EC:2.7.1.148GeneProduct2.7.1.148 (EC Number)
EC:2.7.7.60GeneProduct2.7.7.60 (EC Number)
EC:4.6.1.12GeneProduct4.6.1.12 (EC Number)
EC:5.3.3.2GeneProduct5.3.3.2 (EC Number)
H+Metabolite12408-02-5 (CAS)
H2OMetabolite7732-18-5 (CAS)
LOC_Os01g01710GeneProductLOC_Os01g01710 (Gramene Rice) 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed//isoprenoid biosynthetic process//catalytic activity//1-deoxy-D-xylulose-5-phosphate reductoisomerase
LOC_Os01g58790GeneProductLOC_Os01g58790 (Gramene Rice) GHMP kinases ATP-binding protein, putative, expressed//ATP binding//terpenoid biosynthetic process//4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
LOC_Os01g66360GeneProductLOC_Os01g66360 (Gramene Rice) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, putative, expressed//terpenoid biosynthetic process//4-diphosphocytidyl-2C-methyl-D-erythritol synthase
LOC_Os02g39160GeneProductLOC_Os02g39160 (Gramene Rice) hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed//terpenoid biosynthetic process//sugar:hydrogen symporter activity//phosphoenolpyruvate-dependent sugar phosphotransferase system//4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
LOC_Os02g45660GeneProductLOC_Os02g45660 (Gramene Rice) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed//terpenoid biosynthetic process//2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
LOC_Os03g52170GeneProductLOC_Os03g52170 (Gramene Rice) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed//terpenoid biosynthetic process
LOC_Os05g33840GeneProductLOC_Os05g33840 (Gramene Rice) transketolase, putative, expressed//terpenoid biosynthetic process//1-deoxy-D-xylulose-5-phosphate synthase//transketolase
LOC_Os05g34180GeneProductLOC_Os05g34180 (Gramene Rice) hydrolase, NUDIX family, domain containing protein, expressed//isoprenoid biosynthetic process//terpenoid biosynthetic process//isopentenyl-diphosphate delta-isomerase
LOC_Os06g05100GeneProductLOC_Os06g05100 (Gramene Rice) transketolase, putative, expressed//terpenoid biosynthetic process//1-deoxy-D-xylulose-5-phosphate synthase
LOC_Os07g09190GeneProductLOC_Os07g09190 (Gramene Rice) transketolase, putative, expressed//terpenoid biosynthetic process
LOC_Os07g36190GeneProductLOC_Os07g36190 (Gramene Rice) hydrolase, NUDIX family, domain containing protein, expressed//isopentenyl-diphosphate delta-isomerase
LOC_Os07g40260GeneProductLOC_Os07g40260 (Gramene Rice) eukaryotic aspartyl protease domain containing protein, expressed
NAD(P)+Metabolite53-59-8 (CAS)
NAD(P)HMetabolite2646-71-1 (CAS)
NADP+Metabolite53-59-8 (CAS)
NADPHMetabolite2646-71-1 (CAS)
dimethylallyl-PPMetabolite358-71-4 (CAS)
diphosphateMetabolite2466-09-3
geranylgeranyldiphosphate biosynthesis II (plastidic)PathwayWP2211 (WikiPathways)
phytyl-PP biosynthesisPathway
polyisoprenoid biosynthesisPathway
protein disulfideMetabolite
protein dithiolMetabolite
pyruvateMetabolite127-17-3 (CAS)
Δ3-isopentenyl-PPMetaboliteC00129 (Kegg Compound)

Annotated Interactions

No annotated interactions

Personal tools