Plant primary metabolism (Arabidopsis thaliana)

From WikiPathways

Revision as of 07:26, 16 January 2019 by Tokimatsu (Talk | contribs)
Jump to: navigation, search
1Kaempferol 3-glucoside-(1->6)-glucoside-7-alpha-L-rhamnosideIsorhamnetin 3-neohesperidoside-7-rhamnosideQuercetin 3-O-alpha-L-arabinopyranosideKaempferol 3-rhamnoside-7-glucosideDiosmetin 7-neohesperidosideKaempferol6-MethoxyluteolinDiosmetin 7-rutinosidePruninCyanidin 3-O-[2''-O-(xylosyl) glucoside] 5-O-(6'''-O-malonyl) glucosideCyanidin 3-(6-p-coumaroylglucoside)CyanidinEriodictyolGenkwaninKaempferol 3-galactosideTilirosidePelargonidinLuteolin3-O-MethylquercetinHesperetin 7-glucosideCyanidin 3-O-[2''-O-(xylosyl)-6''-O-(p-O-(glucosyl)-p-coumaroyl) glucoside] 5-O-glucosideCyanidin 3-O-[2''-O-(xylosyl) 6''-O-(p-O-(glucosyl) p-coumaroyl) glucoside] 5-O-[6'''-O-(malonyl) glucoside]ApigeninCyanidin 3-(6''-p-coumaryl-2'''-sinapylsambubioside)-5-(6-malonylglucoside)Kaempferol 3-gentiobiosideDihydroquercetinCyanidin 3-O-[2''-O-(xylosyl)-6''-O-(p-coumaroyl) glucoside] 5-O-malonylglucosideQuercetin 7-glucosideLuteolin 5,7-diglucosideScutellareinApigenin 7,4'-dimethyl etherIsorhamnetin 3-alpha-L-arabinopyranoside-7-rhamnosideAfzelinCyanidin 3-sambubioside-5-glucosideKaempferol 3-neohesperidosideLuteolin 3',7-diglucosideKaempferol 3-O-rutinosideCyanidin 3-O-[2''-O-(2'''-O-(sinapoyl) xylosyl) glucoside] 5-O-glucosideApigenin 7-rutinosideLuteolin 4'-glucosideIsorhamnetin 3-arabinosideCyanidin 3-(6''-(E)-p-coumarylsambubioside)-5-glucosideIsorhamnetin 3-O-rutinosideNaringin[Epicatechin-(4beta->8)]4-epicatechinIsorhamnetin 3-rhamnosideKaempferol 3-robinoside (K 3-(6''-RhaGal))Quercetin 3,7-diglucosideQuercetin 3-neohesperidosideCyanidin 3,5-di-O-glucosideAstragalinCyanidin 3-O-[2-O-(2-O-(sinapoyl)-bata-D-xylopyranosyl) 6-O-(4-O-(beta-D-glucopyranosyl)-p-coumaroyl-bata-D-glucopyranoside] 5-O-[6-O-(malonyl) bata-D-glucopyranoside]Isorhamnetin 3-rhamnoside-7-glucosideProcyanidin B2Quercetin 3-O-L-rhamnosideQuercetin 3-rhamnoside-7-glucosideEpicatechin-(4beta->8)5-epicatechinRutinEpiafzelechin6-HydroxluteolinIsorhamnetin 3-O-beta-D-glucopyranosideDiosmetin 7-glucosideHomoeriodictyolLuteolin 4',7-diglucosideHesperetin 7-neohesperidosideCinnamtannin A1Quercetin 3-neohesperidoside-7-rhamnosideLeucopelargonidinNaringenin 4'-O-glucosideKaempferol 3-galactoside-7-rhamnosideKaempferol 3-glucoside-7-rhamnosideCyanidin 3-O-[2''-O-(2'''-O-(sinapoyl) xylosyl) 6''-O-(p-coumaroyl) glucoside] 5-O-glucosideKaempferol 3-O-rhamninosideLuteolin 7-glucosideCyanidin 3-glucosideCyanidin 3-sophorosideKaempferol 3,7-diglucosideCyanidine 3-sambubiosideCyanidin 3-(6-p-coumaroylglucoside)-5-(6-malonylglucoside)HesperetinIsorhamnetin 3-O-beta-glucopyranoside-7-O-alpha-rhamnopyranoside(+)-epicatechinHesperidinQuercetin 3,7-dirhamnosideCyanidin 3-(6-p-coumaroylglucoside)-5-glucosideKaempferol 3,7-di-O-rhamnosideCosmosiinKaempferol 3-arabinosideAfzelechinHirsutrin, Quercetin 3-GlucosidecatechinChalcone synthaseQuercetin 3-rutinoside-7-rhamnosideCyanidin 3-O-[2''-O-(2'''-O-(sinapoyl) xylosyl) 6''-O-(p-O-(glucosyl) p-coumaroyl) glucoside] 5-O-glucosideQuercetin 3-Arabinoside-7-rhamnoside5,7-DimethoxyapigeninQuercetinDihydrokaempferolLeucocyanidinScutellarein 7-glucuronidep-Coumaroyl-CoAIsorhamnetin 3,7-dirhamnosideKaempferol 3-neohesperidoside-7-rhamnosideQuercetin 3-O-glucoside-7-O-rhamnosideepicatechin heptamer4'-MethylluteolinIsorhamnetin 3-neohesperidosideProcyanidin C1Naringenin chalconeIsorhamnetinCyanidin 3-(6-p-coumaroylsambubioside)PopulninKaempferol 3-alpha-L-arabinofuranoside-7-rhamnosideNaringeninAcacetinKaempferol 7-neohesperidosideCharcone isomeraseCharcone isomeraseCharcone isomerase


Description

Pathway describing the flavonoid biosynthesis.

Try the New WikiPathways

View approved pathways at the new wikipathways.org.

Quality Tags

Ontology Terms

 

Bibliography

  1. Karve A, Rauh BL, Xia X, Kandasamy M, Meagher RB, Sheen J, Moore BD; ''Expression and evolutionary features of the hexokinase gene family in Arabidopsis.''; Planta, 2008 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
117248view09:59, 19 May 2021EweitzModified title
111815view19:09, 8 September 2020EgonwMatched the data source with the given identifier.
105896view11:36, 16 August 2019MkutmonHMDB identifier normalization
102643view07:49, 16 January 2019TokimatsuReverted to version '2018年3月5日 (月) 08:39' by Tokimatsu
102642view07:47, 16 January 2019TokimatsuFix interactions
102641view07:40, 16 January 2019TokimatsuFixed connections.
102640view07:26, 16 January 2019Tokimatsuremove reactions/metabolites undiscovered from Brassicaceae. Add reaction IDs.
102639view07:19, 16 January 2019Tokimatsuremove reactions/metabolites undiscovered from Brassicaceae. Add reaction IDs.
96282view08:39, 5 March 2018EgonwNot a chemical conversion.
82871view16:28, 10 November 2015JmeliusCorrect outdated id
78382view10:22, 7 January 2015MaintBotadded missing graphIds
76240view08:49, 21 June 2014SbohlerGrouped cytosolic malic enzymes 1, 2, and 3.
76235view06:19, 20 June 2014SbohlerCoorected myrosinase annotations (vacuole)
76234view15:37, 19 June 2014AnweshaAnnotated some nodes
75849view09:02, 11 June 2014SbohlerModified description
75847view04:59, 11 June 2014EgonwAdded two more missing metabolite IDs.
75846view04:50, 11 June 2014EgonwAdded missing database names for two protein IDs.
75331view14:45, 19 May 2014SbohlerMoved apoplastic protein out of the cell border.
75330view14:42, 19 May 2014SbohlerParts added to the pathway, including RNA for PLC1,2, NAD-ME1,2, NADP-ME2.
74123view20:17, 31 March 2014EgonwRemoved the list of Uniprot identifiers from the Xref, which can hold only one.
74122view20:16, 31 March 2014EgonwCopied the multiple identifiers to the comment field.
71812view18:17, 18 October 2013EgonwAdded a bunch of missing metabolite identifiers.
71448view19:14, 17 October 2013MaintBotAutomated update of data sources
65321view18:01, 6 June 2013SbohlerPeriodical save, work in progress
65316view17:51, 6 June 2013Sbohlerwork in progress
65312view17:40, 6 June 2013SbohlerPeriodical save, work in progress
65024view21:00, 4 June 2013MaintBotOntology Term : 'glycolysis pathway' added !
65023view21:00, 4 June 2013MaintBotOntology Term : 'Krebs cycle pathway' added !
65022view20:59, 4 June 2013MaintBotModified categories
62875view12:56, 3 May 2013SbohlerModified description
62874view12:54, 3 May 2013SbohlerModified description
62873view12:50, 3 May 2013SbohlerNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
(+)-epicatechinMetaboliteC00000956 (KNApSAcK)
3-O-MethylquercetinMetaboliteC00004632 (KNApSAcK)
4'-MethylluteolinMetaboliteC00001036 (KNApSAcK)
5,7-DimethoxyapigeninMetabolite
6-HydroxluteolinMetaboliteC00003884 (KNApSAcK)
6-MethoxyluteolinMetaboliteC00003885 (KNApSAcK)
AcacetinMetaboliteC00003820 (KNApSAcK)
AfzelechinMetaboliteC00000937 (KNApSAcK)
AfzelinMetaboliteC00005140 (KNApSAcK)
Apigenin 7,4'-dimethyl etherMetaboliteC00001016 (KNApSAcK)
Apigenin 7-rutinosideMetaboliteC00004156 (KNApSAcK)
ApigeninMetaboliteC00003817 (KNApSAcK)
AstragalinMetaboliteC00005138 (KNApSAcK)
Chalcone synthaseGeneProductAT5G13930 (Gramene Arabidopsis)
Charcone isomeraseGeneProductAT3G55120 (KEGG Genes)
Charcone isomeraseGeneProductAT5G05270 (Gramene Arabidopsis)
Charcone isomeraseGeneProductAT5G66220 (KEGG Genes)
Cinnamtannin A1MetaboliteC00009107 (KNApSAcK)
CosmosiinMetaboliteC00001017 (KNApSAcK)
Cyanidin 3,5-di-O-glucosideMetaboliteC00002378 (KNApSAcK)
Cyanidin 3-(6''-(E)-p-coumarylsambubioside)-5-glucosideMetaboliteC00006836 (KNApSAcK)
Cyanidin 3-(6''-p-coumaryl-2'''-sinapylsambubioside)-5-(6-malonylglucoside)MetaboliteC00006838 (KNApSAcK)
Cyanidin 3-(6-p-coumaroylglucoside)-5-(6-malonylglucoside)MetaboliteC00006824 (KNApSAcK)
Cyanidin 3-(6-p-coumaroylglucoside)-5-glucosideMetaboliteC00006819 (KNApSAcK)
Cyanidin 3-(6-p-coumaroylglucoside)MetaboliteC00006800 (KNApSAcK)
Cyanidin 3-(6-p-coumaroylsambubioside)MetaboliteC00006802 (KNApSAcK)
Cyanidin 3-O-[2''-O-(2'''-O-(sinapoyl) xylosyl) 6''-O-(p-O-(glucosyl) p-coumaroyl) glucoside] 5-O-glucosideMetaboliteC00007661 (KNApSAcK)
Cyanidin 3-O-[2''-O-(2'''-O-(sinapoyl) xylosyl) 6''-O-(p-coumaroyl) glucoside] 5-O-glucosideMetaboliteC00007660 (KNApSAcK)
Cyanidin 3-O-[2''-O-(2'''-O-(sinapoyl) xylosyl) glucoside] 5-O-glucosideMetaboliteC00007656 (KNApSAcK)
Cyanidin 3-O-[2''-O-(xylosyl) 6''-O-(p-O-(glucosyl) p-coumaroyl) glucoside] 5-O-[6'''-O-(malonyl) glucoside]MetaboliteC00007659 (KNApSAcK)
Cyanidin 3-O-[2''-O-(xylosyl) glucoside] 5-O-(6'''-O-malonyl) glucosideMetaboliteC00007655 (KNApSAcK)
Cyanidin 3-O-[2''-O-(xylosyl)-6''-O-(p-O-(glucosyl)-p-coumaroyl) glucoside] 5-O-glucosideMetaboliteC00007658 (KNApSAcK)
Cyanidin 3-O-[2''-O-(xylosyl)-6''-O-(p-coumaroyl) glucoside] 5-O-malonylglucosideMetaboliteC00007657 (KNApSAcK)
Cyanidin 3-O-[2-O-(2-O-(sinapoyl)-bata-D-xylopyranosyl) 6-O-(4-O-(beta-D-glucopyranosyl)-p-coumaroyl-bata-D-glucopyranoside] 5-O-[6-O-(malonyl) bata-D-glucopyranoside]MetaboliteC00007570 (KNApSAcK)
Cyanidin 3-glucosideMetaboliteC00002374 (KNApSAcK)
Cyanidin 3-sambubioside-5-glucosideMetaboliteC00006673 (KNApSAcK)
Cyanidin 3-sophorosideMetaboliteC00006658 (KNApSAcK)
CyanidinMetabolite128861 (PubChem-compound)
Cyanidine 3-sambubiosideMetaboliteC00006657 (KNApSAcK)
DihydrokaempferolMetaboliteC00974 (KEGG Compound)
DihydroquercetinMetaboliteC00000677 (KNApSAcK)
Diosmetin 7-glucosideMetaboliteC00004357 (KNApSAcK)
Diosmetin 7-neohesperidosideMetaboliteC00004508 (KNApSAcK)
Diosmetin 7-rutinosideMetaboliteC00004362 (KNApSAcK)
EpiafzelechinMetabolite
Epicatechin-(4beta->8)5-epicatechinMetaboliteC00002918 (KNApSAcK)
EriodictyolMetaboliteC00000960 (KNApSAcK)
GenkwaninMetaboliteC00001043 (KNApSAcK)
Hesperetin 7-glucosideMetaboliteC00008297 (KNApSAcK)
Hesperetin 7-neohesperidosideMetaboliteC00000987 (KNApSAcK)
HesperetinMetaboliteC00000968 (KNApSAcK)
HesperidinMetaboliteC00000970 (KNApSAcK)
Hirsutrin, Quercetin 3-GlucosideMetaboliteC00005373 (KNApSAcK)
HomoeriodictyolMetaboliteC00000969 (KNApSAcK)
Isorhamnetin 3,7-dirhamnosideMetaboliteC00005559 (KNApSAcK)
Isorhamnetin 3-O-beta-D-glucopyranosideMetaboliteC00005525 (KNApSAcK)
Isorhamnetin 3-O-beta-glucopyranoside-7-O-alpha-rhamnopyranosideMetaboliteC00005557 (KNApSAcK)
Isorhamnetin 3-O-rutinosideMetaboliteC00005548 (KNApSAcK)
Isorhamnetin 3-alpha-L-arabinopyranoside-7-rhamnosideMetaboliteC00005551 (KNApSAcK)
Isorhamnetin 3-arabinosideMetaboliteC00005522 (KNApSAcK)
Isorhamnetin 3-neohesperidoside-7-rhamnosideMetabolite
Isorhamnetin 3-neohesperidosideMetaboliteC00005547 (KNApSAcK)
Isorhamnetin 3-rhamnoside-7-glucosideMetaboliteC00005558 (KNApSAcK)
Isorhamnetin 3-rhamnosideMetaboliteC00005526 (KNApSAcK)
IsorhamnetinMetaboliteC00004635 (KNApSAcK)
Kaempferol 3,7-di-O-rhamnosideMetaboliteC00005189 (KNApSAcK)
Kaempferol 3,7-diglucosideMetaboliteC00005182 (KNApSAcK)
Kaempferol 3-O-rhamninosideMetaboliteC00005202 (KNApSAcK)
Kaempferol 3-O-rutinosideMetaboliteC00005169 (KNApSAcK)
Kaempferol 3-alpha-L-arabinofuranoside-7-rhamnosideMetaboliteC00005174 (KNApSAcK)
Kaempferol 3-arabinosideMetaboliteC00005132 (KNApSAcK)
Kaempferol 3-galactoside-7-rhamnosideMetaboliteC00005178 (KNApSAcK)
Kaempferol 3-galactosideMetaboliteC00005137 (KNApSAcK)
Kaempferol 3-gentiobiosideMetaboliteC00005166 (KNApSAcK)
Kaempferol 3-glucoside-(1->6)-glucoside-7-alpha-L-rhamnosideMetaboliteC00005234 (KNApSAcK)
Kaempferol 3-glucoside-7-rhamnosideMetaboliteC00005184 (KNApSAcK)
Kaempferol 3-neohesperidoside-7-rhamnosideMetaboliteC00005237 (KNApSAcK)
Kaempferol 3-neohesperidosideMetaboliteC00005167 (KNApSAcK)
Kaempferol 3-rhamnoside-7-glucosideMetaboliteC00005188 (KNApSAcK)
Kaempferol 3-robinoside (K 3-(6''-RhaGal))MetaboliteC00005160 (KNApSAcK)
Kaempferol 7-neohesperidosideMetaboliteC00005197 (KNApSAcK)
KaempferolMetabolite5280863 (PubChem-compound)
LeucocyanidinMetaboliteC00007235 (KNApSAcK)
LeucopelargonidinMetaboliteC00020638 (KNApSAcK)
Luteolin 3',7-diglucosideMetaboliteC00004290 (KNApSAcK)
Luteolin 4',7-diglucosideMetaboliteC00004294 (KNApSAcK)
Luteolin 4'-glucosideMetaboliteC00004276 (KNApSAcK)
Luteolin 5,7-diglucosideMetabolite
Luteolin 7-glucosideMetaboliteC00004266 (KNApSAcK)
LuteolinMetaboliteC00000674 (KNApSAcK)
Naringenin 4'-O-glucosideMetaboliteC00008208 (KNApSAcK)
Naringenin chalconeMetabolite5280960 (PubChem-compound)
NaringeninMetaboliteC00000982 (KNApSAcK)
NaringinMetaboliteC00000983 (KNApSAcK)
PelargonidinMetaboliteC00007232 (KNApSAcK)
PopulninMetaboliteC00005149 (KNApSAcK)
Procyanidin B2MetaboliteC00009077 (KNApSAcK)
Procyanidin C1MetaboliteC00009098 (KNApSAcK)
PruninMetaboliteC00000998 (KNApSAcK)
Quercetin 3,7-diglucosideMetaboliteC00005427 (KNApSAcK)
Quercetin 3,7-dirhamnosideMetaboliteC00005432 (KNApSAcK)
Quercetin 3-Arabinoside-7-rhamnosideMetaboliteC00005420 (KNApSAcK)
Quercetin 3-O-L-rhamnosideMetaboliteC00005374 (KNApSAcK)
Quercetin 3-O-alpha-L-arabinopyranosideMetaboliteC00005368 (KNApSAcK)
Quercetin 3-O-glucoside-7-O-rhamnosideMetaboliteC00005428 (KNApSAcK)
Quercetin 3-neohesperidoside-7-rhamnosideMetaboliteC00005470 (KNApSAcK)
Quercetin 3-neohesperidosideMetaboliteC00005412 (KNApSAcK)
Quercetin 3-rhamnoside-7-glucosideMetaboliteC00005431 (KNApSAcK)
Quercetin 3-rutinoside-7-rhamnosideMetaboliteC00005473 (KNApSAcK)
Quercetin 7-glucosideMetaboliteC00005382 (KNApSAcK)
QuercetinMetaboliteC00004631 (KNApSAcK)
RutinMetaboliteC00005413 (KNApSAcK)
Scutellarein 7-glucuronideMetaboliteC00004221 (KNApSAcK)
ScutellareinMetaboliteC00003834 (KNApSAcK)
TilirosideMetaboliteC00005851 (KNApSAcK)
[Epicatechin-(4beta->8)]4-epicatechinMetaboliteC00009109 (KNApSAcK)
catechinMetaboliteC00000947 (KNApSAcK)
epicatechin heptamerMetabolite
p-Coumaroyl-CoAMetaboliteC00223 (KEGG Compound)

Annotated Interactions

View all...
SourceTargetTypeDatabase referenceComment
ApigeninAcacetinmim-conversionR03571 (KEGG Reaction)
ApigeninCosmosiinmim-conversionR03574 (KEGG Reaction)
ApigeninLuteolinmim-conversionR06537 (KEGG Reaction)
Cyanidin 3-(6-p-coumaroylglucoside)-5-glucosideCyanidin 3-(6-p-coumaroylglucoside)-5-(6-malonylglucoside)mim-conversionR07910 (KEGG Reaction)
Cyanidin 3-(6-p-coumaroylglucoside)Cyanidin 3-(6-p-coumaroylglucoside)-5-glucosidemim-conversionR06547 (KEGG Reaction)
Cyanidin 3-glucosideCyanidin 3,5-di-O-glucosidemim-conversionR06545 (KEGG Reaction)
Cyanidin 3-glucosideCyanidin 3-(6-p-coumaroylglucoside)mim-conversionR06544 (KEGG Reaction)
Cyanidin 3-glucosideCyanidin 3-sophorosidemim-conversionR07878 (KEGG Reaction)
Cyanidin 3-glucosideCyanidine 3-sambubiosidemim-conversionR10291 (KEGG Reaction)
Cyanidin(+)-epicatechinmim-conversionR06542 (KEGG Reaction)
CyanidinCyanidin 3-glucosidemim-conversionR06535 (KEGG Reaction)
Cyanidine 3-sambubiosideCyanidin 3-sambubioside-5-glucosidemim-conversionR10294 (KEGG Reaction)
DihydrokaempferolDihydroquercetinmim-conversionR03124 (KEGG Reaction)
DihydrokaempferolKaempferolmim-conversionR03126 (KEGG Reaction)
DihydrokaempferolLeucopelargonidinmim-conversionR03123 (KEGG Reaction)
Dihydrokaempferolmim-conversionR02444 (KEGG Reaction)
DihydroquercetinLeucocyanidinmim-conversionR03636 (KEGG Reaction)
DihydroquercetinQuercetinmim-conversionR02160 (KEGG Reaction)
EriodictyolDihydroquercetinmim-conversionR03640 (KEGG Reaction)
EriodictyolLuteolinmim-conversionR03590 (KEGG Reaction)
Hesperetin 7-glucosideHesperetin 7-neohesperidosidemim-conversionR08022 (KEGG Reaction)
HesperetinHesperetin 7-glucosidemim-conversionR08021 (KEGG Reaction)
Hirsutrin, Quercetin 3-GlucosideRutinmim-conversionR04900 (KEGG Reaction)
KaempferolAfzelinmim-conversionR09802 (KEGG Reaction)
KaempferolAstragalinmim-conversionR06611 (KEGG Reaction)
KaempferolKaempferol 3-galactosidemim-conversionR06808 (KEGG Reaction)
KaempferolQuercetinmim-conversionR06538 (KEGG Reaction)
LeucocyanidinCyanidinmim-conversionR05036 (KEGG Reaction)
Leucocyanidincatechinmim-conversionR06532 (KEGG Reaction)
LeucopelargonidinAfzelechinmim-conversionR06615 (KEGG Reaction)
LeucopelargonidinPelargonidinmim-conversionR04276 (KEGG Reaction)
LuteolinLuteolin 7-glucosidemim-conversionR03588 (KEGG Reaction)
Naringenin chalconeNaringeninmim-conversionR02446 (KEGG Reaction)
NaringeninApigeninmim-conversionR02445 (KEGG Reaction)
NaringeninEriodictyolmim-conversionR02442 (KEGG Reaction)
NaringeninNaringenin 4'-O-glucosidemim-conversionR08006 (KEGG Reaction)
NaringeninPruninmim-conversionR02897 (KEGG Reaction)
PelargonidinEpiafzelechinmim-conversionR06541 (KEGG Reaction)
PruninNaringinmim-conversionR06820 (KEGG Reaction)
Quercetin 3-O-L-rhamnosideQuercetin 3-rhamnoside-7-glucosidemim-conversionR09804 (KEGG Reaction)
Quercetin3-O-Methylquercetinmim-conversionR02157 (KEGG Reaction)
QuercetinHirsutrin, Quercetin 3-Glucosidemim-conversionR02158 (KEGG Reaction)
QuercetinQuercetin 3-O-L-rhamnosidemim-conversionR09803 (KEGG Reaction)
p-Coumaroyl-CoANaringenin chalconemim-conversionR01613 (KEGG Reaction)
Retrieved from "https://classic.wikipathways.org/index.php/Pathway:WP2499"
Personal tools