Plant primary metabolism (Arabidopsis thaliana)
From WikiPathways
Description
Plant Primary Metabolism Metapathway
Contains:
- Calvin Cycle (chloroplast) - Glycolysis (cytosol) - Krebs Cycle (mitochondria)
The pathway is currently under construction and does not yet contain A. thaliana annotations.Quality Tags
Ontology Terms
Saving...Bibliography
- Karve A, Rauh BL, Xia X, Kandasamy M, Meagher RB, Sheen J, Moore BD; ''Expression and evolutionary features of the hexokinase gene family in Arabidopsis.''; Planta, 2008 PubMed Europe PMC Scholia
History
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External references
DataNodes
| View all... |
| Name | Type | Database reference | Comment |
|---|---|---|---|
| 1,3-bisphosphoglycerate | Metabolite | ||
| 2,3-dihydroxy-3-methylvalerate | Metabolite | HMDB12140 (HMDB)  | |
| 2,3-dihydroxy-isovalerate | Metabolite | HMDB12141 (HMDB) | |
| 2,6-diaminopimelate | Metabolite | ||
| 2-Acetolactate | Metabolite | HMDB06855 (HMDB) | |
| 2-aceto-2-hydroxybutanoate | Metabolite | ||
| 2-cys peroxiredoxin-like protein | Protein | Q9C5R8 (Uniprot-TrEMBL) | |
| 2-oxo-3-methylvalerate | Metabolite | CHEBI:28654 (ChEBI) | |
| 2-oxo-isovalerate | Metabolite | 49 (PubChem-compound) | |
| 2-oxoglutarate | Metabolite | ||
| 2-oxoglutarate dehydrogenase | Protein | ||
| 2H+ | Metabolite | ||
| 3-phosphoglycerate | Metabolite | ||
| 30S ribosomal protein S5 | Protein | P93014 (Uniprot-TrEMBL) | |
| 5-amino-levulinate | Metabolite | ||
| 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase | Protein | O50008 (Uniprot-TrEMBL) | |
| ADP | Metabolite | ||
| ADP-glucose pyrophosphorylase | Protein | ||
| ADP-glucose | Metabolite | HMDB06557 (HMDB) | |
| ATP-dependent phosphofructokinase | Protein | ||
| ATP | Metabolite | HMDB00538 (HMDB) | |
| Acetyl-CoA | Metabolite | HMDB01206 (HMDB) | |
| CO2 | Metabolite | ||
| CO2 + H2O | Metabolite | ||
| CO2 | Metabolite | HMDB01967 (HMDB) | |
| Calvin Cycle | Pathway | ||
| CoA | Metabolite | ||
| Cystathionine | Metabolite | HMDB00099 (HMDB) | |
| Cysteine and Methionine Biosynthesis | Pathway | ||
| Cysteine | Metabolite | HMDB00574 (HMDB) | |
| DNA | Metabolite | ||
| DNA (cytosine-5-)-methyltransferase | Protein | 2.1.1.37 (Enzyme Nomenclature) | |
| DNA 5-methylcytosine | Metabolite | ||
| Dihydroxyacetone phosphate | Metabolite | HMDB01473 (HMDB) | |
| FAD+ | Metabolite | HMDB01248 (HMDB) | |
| FADH2 | Metabolite | HMDB01197 (HMDB) | |
| GAPC1 | Rna | AT3G04120 (TAIR) | |
| GAPC2 | Rna | AT1G13440 (TAIR) | |
| Glutamate Biosynthesis | Pathway | ||
| Glycolysis | Pathway | ||
| H+ | Metabolite | ||
| H2CO3 | Metabolite | ||
| H2O | Metabolite | ||
| H2O + O2 | Metabolite | ||
| H2O2 | Metabolite | ||
| H2O | Metabolite | HMDB02111 (HMDB) | |
| HCO3- | Metabolite | ||
| Homocysteine | Metabolite | HMDB00742 (HMDB) | |
| Isoleucine | Metabolite | HMDB00172 (HMDB) | |
| Methionine | Metabolite | HMDB00696 (HMDB) | |
| NAD+ | Metabolite | HMDB00902 (HMDB) | |
| NAD-ME1 | Rna | AT2G13560 (TAIR) | |
| NAD-ME2 | Rna | AT4G00570 (TAIR) | |
| NADH | Metabolite | HMDB01487 (HMDB) | |
| NADP+ | Metabolite | HMDB00217 (HMDB) | |
| NADP+ | Metabolite | HMDB00902 (HMDB) | |
| NADP-ME2 | Rna | AT5G11670 (TAIR) | |
| NADPH | Metabolite | HMDB00221 (HMDB) | |
| NADPH | Metabolite | HMDB01487 (HMDB) | |
| O-acetyl-L-serine | Metabolite | ||
| O-phosphoserine sulfhydrylase | Protein | 2.5.1.65 (Enzyme Nomenclature) | |
| O2 | Metabolite | ||
| O2 + H+ | Metabolite | ||
| PLC1 | Rna | AT1G76100 (TAIR) | |
| PLC2 | Rna | At1g20340 (TAIR) | |
| PPi | Metabolite | ||
| PPi-dependent phosphofructokinase | Protein | ||
| Photorespiration | Pathway | ||
| Pi | Metabolite | ||
| Porphyrin and Chlorophyll metabolism | Pathway | ||
| RuBisCO LSU | Protein | O03042 (Uniprot-TrEMBL) | |
| RuBisCO SSU | Protein | 4.1.1.39 (Enzyme Nomenclature) | |
| RuBisCO activase | Protein | P10896 (Uniprot-TrEMBL) | |
| RuBisCO activase | Protein | Q941B7 (Uniprot-TrEMBL) | |
| S-Adenosylhomocysteine | Metabolite | HMDB00939 (HMDB) | |
| S-adenosylmethionine synthase | Protein | Q9SJL8 (Uniprot-TrEMBL) | |
| S-sdenosylmethionine | Metabolite | HMDB01185 (HMDB) | |
| Serine | Metabolite | HMDB00187 (HMDB) | |
| Starch Metabolism | Pathway | ||
| Succinyl-CoA | Metabolite | HMDB01022 (HMDB) | |
| Sucrose Metabolism | Pathway | ||
| TCA Cycle (Krebs Cycle) | Pathway | ||
| Thylakoid lumenal 19 kDa protein | Protein | P82658 (Uniprot-TrEMBL) | |
| UDP-glucose | Metabolite | ||
| UDP-glucose pyrophosphorylase | Protein | ||
| UTP | Metabolite | ||
| Valine and Isoleucine Biosynthesis | Pathway | ||
| Valine | Metabolite | HMDB00883 (HMDB) | |
| acetolactate synthase | Protein | ||
| aconitase | Protein | ||
| adenosylhomocysteinase | Protein | Q9LK36 (Uniprot-TrEMBL) | |
| alanine dehydrogenase | Protein | 1.4.1.1 (Enzyme Nomenclature) | |
| alanine | Metabolite | HMDB00161 (HMDB) | |
| aldolase | Protein | ||
| aldolase | Protein | O65581 (Uniprot-TrEMBL) | |
| aldolase | Protein | O65581 (Uniprot-SwissProt) | |
| aldolase | Protein | Q944G9 (Uniprot-SwissProt) | |
| aldolase | Protein | Q944G9 (Uniprot-TrEMBL) | |
| amylase | Protein | GO:0016160 (GeneOntology) | |
| aspartate | Metabolite | ||
| aspartate 4-decarboxylase | Protein | 4.1.1.12 (Enzyme Nomenclature) | |
| branched-chain-amino-acid transaminase | Protein | ||
| carbonic anhydrase 1 | Protein | P27140 (Uniprot-SwissProt) | |
| carbonic anhydrase 2 | Protein | P42737 (Uniprot-SwissProt) | |
| citrate | Metabolite | ||
| citrate synthase | Protein | ||
| copper chaperone | Protein | O82089 (Uniprot-TrEMBL) | |
| cystathionine beta-lyase | Protein | 4.4.1.8 (Enzyme Nomenclature) | |
| cystathionine gamma-lyase | Protein | 4.4.1.1 (Enzyme Nomenclature) | |
| cysteine proteinase inhibitor 6 | Protein | Q8H0X6 (Uniprot-TrEMBL) | |
| diaminopimelate decarboxylase | Protein | 4.1.1.20 (Enzyme Nomenclature) | |
| diaminopimelate epimerase | Protein | Q9LFG2 (Uniprot-TrEMBL) | |
| dihydroxy-acid dehydratase | Protein | ||
| elongation factor EF-G/SCO1 | Protein | Q94BR7 (Uniprot-TrEMBL) | |
| erythrose 4-phosphate | Metabolite | HMDB01321 (HMDB) | |
| ferredoxin | Protein | ||
| ferredoxin-NADP+ reductase | Protein | Q8W493 (Uniprot-TrEMBL) | |
| fructose 1,6-bisphosphate aldolase | Protein | GO:0004332 (GeneOntology) | |
| fructose 1,6-bisphosphate | Metabolite | HMDB01058 (HMDB) | |
| fructose 6-phosphate | Metabolite | HMDB00124 (HMDB) | |
| fructose-1,6-bisphosphatase | Protein | ||
| fructose-1,6-bisphosphatase | Protein | 3.1.3.11 (Enzyme Nomenclature) | |
| fructose-1,6-bisphosphate | Metabolite | HMDB01058 (HMDB) | |
| fructose | Metabolite | HMDB00660 (HMDB) | |
| fumarase | Protein | ||
| fumarate | Metabolite | ||
| glucan endo-1,3-beta-glucosidase acidic isoform | Protein | P33157 (Uniprot-TrEMBL) | |
| glucose 1-phosphate | Metabolite | HMDB01586 (HMDB) | |
| glucose 6-phosphate | Metabolite | HMDB01401 (HMDB) | |
| glucose kinase | Protein | ||
| glucose-6-phosphate isomerase | Protein | GO:0004347 (GeneOntology) | |
| glucose | Metabolite | HMDB00122 (HMDB) | |
| glutamate | Metabolite | ||
| glutamate-1-semialdehyde | Metabolite | ||
| glutamate-1-semialdehyde 2,1-aminomutase 2 | Protein | Q42522 (Uniprot-TrEMBL) | |
| glutamate�tRNA ligase | Protein | 6.1.1.17 (Enzyme Nomenclature) | |
| glutamyl-tRNA (Glu) | Metabolite | ||
| glutamyl-tRNA reductase | Protein | 1.2.1.70 (Enzyme Nomenclature) | |
| glutaredoxin | Protein | PF00462 (Pfam) | |
| glutathione S-transferase | Protein | P46422 (Uniprot-TrEMBL) | |
| glutathione disulfide | Metabolite | ||
| glutathione reductase | Protein | ||
| glutathione-S-transferase | Protein | P42760 (Uniprot-TrEMBL) | |
| glutathione-S-transferase | Protein | Q9SRY5 (Uniprot-TrEMBL) | |
| glutathione | Metabolite | HMDB00125 (HMDB) | |
| glyceraldahyde-3-phosphate | Metabolite | ||
| glyceraldehyde 3-phosphate dehydrogenase | Protein | GO:0004365 (GeneOntology) | |
| glyceraldehyde-3-phosphate dehydrogenase | Protein | P25856 (Uniprot-TrEMBL) | |
| glycerate 1,3-bisphosphate | Metabolite | ||
| glycerate 2-phosphate | Metabolite | ||
| glycerate 3-phosphate | Metabolite | ||
| glycine-rich RNA-binding protein 7 | Protein | Q03250 (Uniprot-TrEMBL) | |
| heat shock cognate 70 kDa protein 1 | Protein | P22953 (Uniprot-TrEMBL) | |
| hexokinase | Protein | GO:0004396 (GeneOntology) | |
| hexose phosphate isomerase | Protein | ||
| invertase | Protein | ||
| isocitrate | Metabolite | ||
| isocitrate dehydrogenase | Protein | GO:0004449 (GeneOntology) | |
| isocitrate dehydrogenase | Protein | Q9SRZ6 (Uniprot-TrEMBL) | |
| ketol-acid reductoisomerase | Protein | Q05758 (Uniprot-TrEMBL) | |
| lipoxygenase 2 | Protein | P38418 (Uniprot-TrEMBL) | |
| luminal-binding protein 1 | Protein | Q9LKR3 (Uniprot-TrEMBL) | |
| luminal-binding protein 2 | Protein | Q39043 (Uniprot-TrEMBL) | |
| lysine | Metabolite | HMDB00182 (HMDB) | |
| malate | Metabolite | ||
| malate dehydrogenase | Protein | GO:0016615 (GeneOntology) | |
| malate dehydrogenase | Protein | GO:0016619 (GeneOntology) | |
| malic enzyme | Protein | GO:0004470 (GeneOntology) | |
| malic enzyme | Protein | Q9LYG3 (Uniprot-TrEMBL) | |
| meso-2,6-diaminopimelate | Metabolite | ||
| myrosinase 1 | Protein | P37702 (Uniprot-TrEMBL) | |
| oxaloacetate | Metabolite | ||
| peroxiredoxin-2E | Protein | Q949U7 (Uniprot-TrEMBL) | |
| phosphoenolpyruvate | Metabolite | ||
| phosphoenolpyruvate carboxylase | Protein | ||
| phosphoglucomutase | Protein | GO:0004614 (GeneOntology) | |
| phosphoglycerate kinase | Protein | 2.7.2.3 (Enzyme Nomenclature) | |
| phosphoglycerate kinase | Protein | GO:0004618 (GeneOntology) | |
| phosphoglycerate mutase | Protein | GO:0004619 (GeneOntology) | |
| phosphopyruvate hydratase | Protein | GO:0004634 (GeneOntology) | |
| phosphoribulokinase | Protein | ||
| plastocyanin 2 | Protein | P42699 (Uniprot-TrEMBL) | |
| plastoquinone | Metabolite | ||
| pyruvate | Metabolite | ||
| pyruvate dehydrogenase | Protein | GO:0004738 (GeneOntology) | |
| pyruvate dehydrogenase | Protein | O24457 (Uniprot-TrEMBL) | |
| pyruvate kinase | Protein | GO:0004743 (GeneOntology) | |
| ribonucleoprotein | Protein | Q9ZUU4 (Uniprot-TrEMBL) | |
| ribose 5-phosphate | Metabolite | HMDB01548 (HMDB) | |
| ribulose 5-phosphate 3-epimerase activity | Protein | GO:0004750 (GeneOntology) | |
| ribulose 5-phosphate isomerase | Protein | ||
| ribulose 5-phosphate | Metabolite | HMDB00618 (HMDB) | |
| ribulose-1,5-bisphosphate | Metabolite | ||
| sedoheptulose 1,7-bisphosphatase | Protein | ||
| sedoheptulose 1,7-bisphosphate | Metabolite | ||
| sedoheptulose 7-phosphate | Metabolite | HMDB01068 (HMDB) | |
| serine acetyltransferase | Protein | 2.3.1.30 (Enzyme Nomenclature) | |
| serine ammonia-lyase | Protein | 4.3.1.17 (Enzyme Nomenclature) | |
| small subunit ribosomal protein S1 | Protein | Q93VC7 (Uniprot-TrEMBL) | |
| starch | Metabolite | ||
| starch posphorylase | Protein | ||
| starch synthase | Protein | ||
| succinate | Metabolite | ||
| succinate dehydrogenase | Protein | GO:0000104 (GeneOntology) | |
| succinyl-CoA synthetase | Protein | ||
| sucrose synthase | Protein | ||
| sucrose | Metabolite | HMDB00258 (HMDB) | |
| tRNAGlu | Metabolite | ||
| thioredoxin reductase | Protein | 1.8.1.9 (Enzyme Nomenclature) | |
| thioredoxin | Protein | IPR013766 (InterPro) | |
| transketolase | Protein | GO:0004802 (GeneOntology) | |
| triose phosphate isomerase | Protein | ||
| xyluloase-5-phosphate | Metabolite |
Annotated Interactions
No annotated interactions
