Urea cycle and metabolism of amino groups (Rattus norvegicus)

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Pyrimidine metabolismCreatineSpermineCarbamoyl-PFumarateSpermidineFormateFormaldehydeNH3Pro metabolismN-Acetyl-glutamateL-GlutamateCitrate cycle (TCA cycle)N-MethylhydantoinPutrescineUrea-1-carboxylate(S)-1-Pyrroline-5-carboxylatecreatine-PNitrogen metabolismL-GlutamylN-Acetyl-L-glutamateGuanidinoacetateL-OrnithineGlutamate metabolismSarcosineL-AspartatePhosphoguanidinoacetateD-Arg and D-ornithine metabolismArginineL-CitrullineL-ProlineCO2N-Acetyl-L-glutamateN2-Acetyl-L-ornithineAla and aspartate metabolismAmino acid metabolismL-Glutamate-5-semialdehydeN-CarbamoylsarcosinePurine metabolismCreatinineUreaArginine metabolismC03406Cps12.7.3.1Arg1PycsLOC3035632.7.2.83.5.1.51.2.1.462.6.1.69Acy1CkmGlud1GamtOdc12.3.1.356.3.4.61.2.1.382.6.1.113.5.3.3GatmLOC3634693.5.1.54OtcAslAssPycs3.5.1.163.5.4.211.5.99.1Oat3.5.1.59PycrlPycr1Arg2LOC3634693.5.2.14Ckb3.5.2.10Srm


Description

GenMAPP notes: link to original KEGG map in comments is broken, correct link: http://www.kegg.jp/kegg-bin/show_pathway?rno00220

Comments

GenMAPP notes 
Link to original KEGG map: http://www.genome.ad.jp/dbget-bin/show pathway?rno00220
GenMAPP remarks 
Eddited by Sebastien Burel

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Quality Tags

Ontology Terms

 

Bibliography

No bibliography


History

View all...
CompareRevisionActionTimeUserComment
109430view09:51, 17 March 2020L DupuisConnected line
109408view18:05, 16 March 2020L DupuisFixed interactions
107236view14:33, 17 September 2019MaintBotChEBI identifier normalization
93711view12:08, 11 August 2017DeSlAdded 3 IDs for previously not annotated nodes.
93710view12:02, 11 August 2017DeSlAdded more connectivity between nodes.
93709view11:56, 11 August 2017DeSlTried to connect all the nodes for this PW; lines were hidden under the nodes :(
93706view11:37, 11 August 2017DeSlAdded IDs for not annotated metabolite nodes, changed appearence of several nodes.
93704view10:56, 11 August 2017DeSlModified description
79705view08:09, 6 April 2015EgonwReplaced a gene name with its Entrez Gene identifier.
79704view08:06, 6 April 2015EgonwConverted more labels to metabolite DataNode's.
77392view11:30, 5 September 2014EgonwAdded a bunch of ChemSpider identifiers for metabolites with IUPAC names.
77391view11:18, 5 September 2014EgonwReplace a bunch of Labels for metabolites with Metabolite DataNodes (without IDs).
72184view07:32, 27 October 2013EgonwConverted a bunch of labels to Metabolite DataNodes, and cleaned up arrows.
72141view09:59, 25 October 2013Mkutmonadded annotation of EC numbers
67800view19:42, 26 June 2013EgonwConnected some dots.
67739view11:57, 26 June 2013DdiglesOntology Term : 'urea cycle pathway' added !
41771view02:42, 2 March 2011MaintBotRemoved redundant pathway information and comments
21003view11:30, 14 November 2008MaintBot[[Pathway:Rattus norvegicus:Urea cycle and metabolism of amino groups KEGG]] moved to [[Pathway:WP153]]: Moved to stable identifier
8480view13:46, 7 January 2008MaintBot[[Pathway:Rat:Urea cycle and metabolism of amino groups KEGG]] moved to [[Pathway:Rattus norvegicus:Urea cycle and metabolism of amino groups KEGG]]: Renaming species
7856view16:23, 18 December 2007MaintBotfixed category names
7415view12:42, 4 November 2007MaintBotAdded categories to GPML
6608view22:20, 22 May 2007L.M.Ferrantegpml file for [[Rat:Urea_cycle_and_metabolism_of_amino_groups_KEGG]]

External references

DataNodes

View all...
NameTypeDatabase referenceComment
(S)-1-Pyrroline-5-carboxylateMetabolite10140206 (Chemspider) (S)-1-Pyrroline-5-carboxylate
1.2.1.38GeneProduct1.2.1.38 (Enzyme Nomenclature)
1.2.1.46GeneProduct1.2.1.46 (Enzyme Nomenclature)
1.5.99.1GeneProduct1.5.99.1 (Enzyme Nomenclature)
2.3.1.35GeneProduct2.3.1.35 (Enzyme Nomenclature)
2.6.1.11GeneProduct2.6.1.11 (Enzyme Nomenclature)
2.6.1.69GeneProduct2.6.1.69 (Enzyme Nomenclature)
2.7.2.8GeneProduct2.7.2.8 (Enzyme Nomenclature)
2.7.3.1GeneProduct2.7.3.1 (Enzyme Nomenclature)
3.5.1.16GeneProduct3.5.1.16 (Enzyme Nomenclature)
3.5.1.5GeneProduct3.5.1.5 (Enzyme Nomenclature)
3.5.1.54GeneProduct3.5.1.54 (Enzyme Nomenclature)
3.5.1.59GeneProduct3.5.1.59 (Enzyme Nomenclature)
3.5.2.10GeneProduct3.5.2.10 (Enzyme Nomenclature)
3.5.2.14GeneProduct3.5.2.14 (Enzyme Nomenclature)
3.5.3.3GeneProduct3.5.3.3 (Enzyme Nomenclature)
3.5.4.21GeneProduct3.5.4.21 (Enzyme Nomenclature)
6.3.4.6GeneProduct6.3.4.6 (Enzyme Nomenclature)
Acy1GeneProduct300981 (Entrez Gene)
Ala and aspartate metabolismPathway
Amino acid metabolismPathway
Arg1GeneProduct29221 (Entrez Gene)
Arg2GeneProduct29215 (Entrez Gene)
Arginine metabolismPathway
ArginineMetabolite227 (Chemspider) L-Arginine
AslGeneProduct59085 (Entrez Gene)
AssGeneProduct25698 (Entrez Gene)
C03406MetaboliteC03406 (KEGG Compound) N-(L-Arginino)succinate
CO2Metabolite280 (PubChem-compound) CO2
Carbamoyl-PMetabolite17672 (ChEBI) Carbamoyl
Citrate cycle (TCA cycle)Pathway
CkbGeneProduct24264 (Entrez Gene)
CkmGeneProduct24265 (Entrez Gene)
Cps1GeneProduct24956 (Entrez Gene)
CreatineMetabolite566 (Chemspider) Creatine
CreatinineMetaboliteCHEBI:16737 (ChEBI) Creatinine
D-Arg and D-ornithine metabolismPathway
FormaldehydeMetabolite692 (Chemspider) Formaldehyde
FormateMetabolite277 (Chemspider) Formate
FumarateMetabolite144248 (Chemspider) Fumarate
GamtGeneProduct25257 (Entrez Gene)
GatmGeneProduct81660 (Entrez Gene)
Glud1GeneProduct24399 (Entrez Gene)
Glutamate metabolismPathway
GuanidinoacetateMetabolite10707243 (Chemspider) Guanidinoacetate
L-AspartateMetabolite3714789 (Chemspider) L-Aspartate
L-CitrullineMetabolite810 (Chemspider) L-Citrulline
L-Glutamate- 5-semialdehydeMetaboliteCHEBI:17232 (ChEBI)
L-GlutamateMetabolite4302384 (Chemspider) L-Glutamate
L-GlutamylMetaboliteC20949 (KEGG Compound) L-Glutamyl
L-OrnithineMetabolite380 (Chemspider) L-Ornithine
L-ProlineMetaboliteCHEBI:17203 (ChEBI) L-Proline
LOC303563GeneProduct303563 (Entrez Gene)
LOC363469GeneProduct363469 (Entrez Gene)
N-Acetyl-L-glutamateMetabolite10626897 (Chemspider) N-Acetyl-L-glutamate
N-Acetyl-glutamateMetabolite10626897 (Chemspider) N-Acetyl-L-glutamate
N-CarbamoylsarcosineMetabolite388495 (Chemspider) N-Carbamoylsarcosine
N-MethylhydantoinMetabolite62430 (Chemspider) N-Methylhydantoin
N2-Acetyl-L-ornithineMetabolite439232 (PubChem-compound) N2-Acetyl-L-ornithine
NH3MetaboliteNH3
Nitrogen metabolismPathway
OatGeneProduct64313 (Entrez Gene)
Odc1GeneProduct24609 (Entrez Gene)
OtcGeneProduct25611 (Entrez Gene)
PhosphoguanidinoacetateMetabolite19992631 (Chemspider) Phosphoguanidinoacetate
Pro metabolismPathway
Purine metabolismPathway
PutrescineMetabolite13837702 (Chemspider) Putrescine
Pycr1GeneProduct287877 (Entrez Gene)
PycrlGeneProduct300035 (Entrez Gene)
PycsGeneProduct361755 (Entrez Gene)
Pyrimidine metabolismPathway
SarcosineMetabolite1057 (Chemspider) Sarcosine
SpermidineMetabolite1071 (Chemspider) Spermidine
SpermineMetabolite1072 (Chemspider) Spermine
SrmGeneProduct84596 (Entrez Gene)
Urea-1-carboxylateMetaboliteUrea-1-carboxylate
UreaMetabolite1143 (Chemspider) Urea
creatine-PMetabolitePhosphocreatine

Annotated Interactions

No annotated interactions
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