Help:Contents

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<h2 class="frontPagePanel blueFg" style="width:660px;margin:1em;">Where do you want to start?</h2>
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{|style="width:660px;" border="0" valign="top" cellspacing="20px" cellpadding="0px"
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|-
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|align="center"|<big>'''Biologists and Chemists'''</big>{{#imgLink:ForResearchers.png|180|center|||Help:Researchers|Researchers}}
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|align="center"|<big>'''Pathway Authors'''</big>{{#imgLink:ForAuthors.png|180|center|||Help:Authors|For Pathway Authors}}
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|align="center"|<big>'''Developers'''</big>{{#imgLink:ForDevelopers.png|180|center|||Help:Developers|For Developers}}
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|valign="top" margin="5px"|<big>How to use WikiPathways in your research.</big>
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|valign="top"|<big>How to model and manage your own pathways using WikiPathways.</big>
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|valign="top"|<big>How to access content programmatically and integrate with your tools and pipelines.</big>
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== Introduction ==
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<h2 class="frontPagePanel blueFg" style="width:660px;margin:1em;">FAQ</h2>
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* [[:Help:Overview|Overview]]
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<big>
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* [[:Help:New Contributor Quickstart|New Contributor Quickstart]]
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* [https://www.wikipathways.org/index.php/WikiPathways:About What is WikiPathways?]
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* [[:Help:Finding Pathways|Finding Pathways]]
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* [[:Help:Finding Pathways|How do I find a particular pathway?]]
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* [[:Help:Viewing Pathways|The Pathway Page]]
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* [[:Help:Viewing Pathways|What information is on a pathway page?]]
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* [[:Help:Editing Pathways|Editing Pathways]]
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* [https://goo.gl/forms/PqBXnKXAjI1hnQMQ2 Can I requeset a new pathway?]
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* [https://goo.gl/forms/PqBXnKXAjI1hnQMQ2 Request a Pathway]
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* [[How_to_cite_WikiPathways|How do I cite a pathway?]]
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* [[:Help:Deleting Pathways|Deleting Pathways]]
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* [[Download_Pathways|How do I download all pathways?]]
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* [http://nrnb.org/showcase-wikipathways-intro.html Introductory Slides]
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* [[:Help:Account Maintenance|How do user accounts work?]]
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* [[:Help:Account Maintenance|User Accounts]]
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* [[:Help:Policies|What are your site policies?]]
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* [[:Help:Policies|Site Policies]]
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* [[:Help:Private_Pathways|Can I keep my pathway private?]]
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* [http://nrnb.org/showcase-wikipathways-intro.html Do you have introductory presentation slides?]
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* [[:Help:Supported_Software_Tools|What other software tools use WikiPathways?]]
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* [[Report_a_bug|Where can I report a problem?]]
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== For Biologists and Chemists ==
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</big>
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* [[:Help:Tutorial|Introductory Tutorial]]
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* [http://plugins.pathvisio.org/wp-client/tutorials/ Accessing WikiPathways in PathVisio]
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* [http://www.pathvisio.org/documentation/tutorials/tutorial-2/ Data analysis in PathVisio]
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* [https://cytoscape.org/cytoscape-tutorials/protocols/wikipathways-app/#/title Visualizing data on pathways in Cytoscape]
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* [[:Help:Supported Software Tools|Supported Software Tools]]
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* [[:Help:Frequently Asked Questions|Frequently Asked Questions]]
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* [[:Help:Known problems|Known Problems and Fixes]]
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* [http://www.biostars.org/local/search/page?q=wikipathways WikiPathways on Biostars]
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== For Pathway Authors and Curators ==
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* [http://academy.wikipathways.org/ WikiPathways Academy]
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* [http://wikipathways.org/img_auth.php/d/d0/Instructions_for_WikiPathways_Authors.pdf Guide for New Authors]
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* [https://wikipathways.github.io/academy/qaprotocol.html Quality Assurance Protocol]
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* [[:Help:PathwayStyling|Styling WikiPathways Models in Cytoscape]]
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* [[:Help:Guidelines_EditorPalette|Editor's Palette Guide]]
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* [[:Help:Guidelines|Guidelines for Contributors]]
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* [[:Help:CurationTags|Quality Tags]]
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* [[:Help:Private Pathways|Private Pathways]]
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* [[:Help:Watching Pathways|Keeping Track of Pathways]]
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* [[:Help:WPClientPluginCuration|Editing pathways with the WikiPathways Client plugin for PathVisio]]
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* [https://docs.google.com/document/d/176BshTLE97V-gjzWrt0cgZEpQwnGUI86NdTaatETeSU/edit?pli=1#heading=h.b85xd25jlcie WikiPathways portal maintenance]
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* [[:Help:WikiPathways Portals|WikiPathways Portals]]
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* [[Template:User_ORCID|How to add your ORCID identifier]]
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* [[:Help:Reward Mechanism|Social Reward Mechanism]]
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* [[:Help:Testimonials|Author Testimonials]]
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== For Data Miners and Developers ==
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* [[:Special:TissueAnalyzer | TissueAnalyzer]]
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* [http://wikipathways.org/pathway-finder?database=mirtarbase&identifiers=hsa-miR-148a-3p,hsa-miR-21-3p,hsa-miR-29a-3p,hsa-miR-20a-5p miRNA Targeted Pathway Finder]
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* [[:Help:Databases|WikiPathways Databases]]
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* [[:Help:WikiPathways Webservice/API|WikiPathways Web Service]]
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* [[:Help:WikiPathways_SPARQL_queries|WikiPathways SPARQL Queries]]
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* [[PathwayWidget|Pathway Widget]]
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'''Other Languages: ''' [[:Help:Portuguese:Conteúdo|Portuguese]]
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Revision as of 21:11, 30 November 2018


Where do you want to start?

Biologists and Chemists Pathway Authors Developers
How to use WikiPathways in your research. How to model and manage your own pathways using WikiPathways. How to access content programmatically and integrate with your tools and pipelines.

FAQ

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