Development

From WikiPathways

(Difference between revisions)
Jump to: navigation, search
(→Egon Willighagen)
Current revision (19:18, 30 August 2021) (view source)
m (Protected "Development" [edit=sysop:move=sysop])
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
== WikiPathways Organization ==
+
== WikiPathways development ==
-
This document defines the scope, roles and processes involved in the WikiPathways project:
+
As an open source project, we welcome new developers at all levels. Please visit our repo at
-
* [[media:WikiPathways_Organization.pdf|WikiPathways_Organization.pdf]]
+
https://github.com/wikipathways/wikipathways.org. Built upon MediaWiki,
 +
the site includes numerous custom extensions, javascript, skins and hacks.
-
== WikiPathways development ==
+
=== How to Contribute ===
-
Developer information, a roadmap and bugs can be found at:
+
* For all potential [https://github.com/wikipathways/wikipathways.org/blob/master/CONTRIBUTING.md Contributors]
-
* http://developers.pathvisio.org/
+
* The project [https://github.com/wikipathways/wikipathways.org/blob/master/README.md Readme]
 +
* The project [https://github.com/wikipathways/wikipathways.org/blob/master/ROADMAP.md Roadmap]
 +
* Our community [https://github.com/wikipathways/wikipathways.org/blob/master/CODEOFCONDUCT.md Code of Conduct]
 +
* Our organization [https://github.com/wikipathways/wikipathways.org/blob/master/SOP.md SOP]
 +
* Developer information for the Java-based Pathvisio application: http://developers.pathvisio.org/
* [https://www.google.com/calendar/ical/e3v5j4msn3f0gurkkfobd3gau0%40group.calendar.google.com/public/basic.ics Meeting schedule (Google Calendar)]
* [https://www.google.com/calendar/ical/e3v5j4msn3f0gurkkfobd3gau0%40group.calendar.google.com/public/basic.ics Meeting schedule (Google Calendar)]
Line 14: Line 19:
See the [[:Help:WikiPathways Sparql queries|WikiPathways SPARQL queries]] for example queries to interact with WikiPathways SPARQL query
See the [[:Help:WikiPathways Sparql queries|WikiPathways SPARQL queries]] for example queries to interact with WikiPathways SPARQL query
-
== WikiPathways team ==
+
== Project Monitoring ==
-
* '''Founders:''' [[#Thomas A.J. Kelder|Thomas A.J. Kelder]], [[#Alexander R. Pico|Alexander R. Pico]], [[#Martijn van Iersel|Martijn van Iersel]], [[#Kristina Hanspers|Kristina Hanspers]], [[#Bruce R. Conklin|Bruce R. Conklin]], [[#Chris T. Evelo|Chris T. Evelo]]
+
* [https://jenkins.bigcat.unimaas.nl/job/Website%20Monitoring/ Website tests]
-
* '''Board of Directors:'''  [[#Alexander R. Pico|Alexander R. Pico]], [[#Chris T. Evelo|Chris T. Evelo]]
+
* [https://jenkins.bigcat.unimaas.nl/job/PathVisio/ PathVisio]
-
* '''Architects:'''  [[#Alexander R. Pico|Alexander R. Pico]], [[#Martina Kutmon|Martina Kutmon]]
+
* [https://jenkins.bigcat.unimaas.nl/job/rwikipathways/ rWikiPathways]
-
* '''Active Developers:''' [[#Alexander R. Pico|Alexander R. Pico]], [[#Kristina Hanspers|Kristina Hanspers]], [[#Thomas A.J. Kelder|Thomas A.J. Kelder]], [[#Martina Kutmon|Martina Kutmon]], [[#Andra Waagmeester|Andra Waagmeester]], [[#Anwesha Dutta|Anwesha Dutta]], [[#Anders Riutta|Anders Riutta]], Nuno Nunes, Mark Hershberger
+
-
* '''Data Scientist:''' [[#Andra Waagmeester|Andra Waagmeester]], [[#Anders Riutta|Anders Riutta]], [[#Egonw|Egon Willighagen]]
+
-
* '''Curation Coordinators:''' [[#Kristina Hanspers|Kristina Hanspers]]
+
-
 
+
-
==== Thomas A.J. Kelder ====
+
-
{|
+
-
|[[Image:Thomas.jpg|left|50px|caption]]
+
-
|
+
-
* Co-founder
+
-
* Developer
+
-
* Scientist Bioinformatics, [http://www.tno.nl/ TNO]
+
-
|}
+
-
 
+
-
==== Alexander R. Pico ====
+
-
{|
+
-
|[[Image:Alex.jpg|left|60px|caption]]
+
-
|
+
-
* Co-founder
+
-
* Developer
+
-
* Associate Director of Bioinformatics at [http://www.gladstoneinstitutes.org/scientist/pico Gladstone Institutes]
+
-
|}
+
-
 
+
-
==== Martijn van Iersel ====
+
-
{|
+
-
|[[Image:Martijn.jpg|left|60px|caption]]
+
-
|
+
-
* Co-founder
+
-
* Developer
+
-
* Bioinformatics Consultant at General Bioinformatics [http://www.generalbioinformatics.com/]
+
-
|}
+
-
 
+
-
==== Kristina Hanspers ====
+
-
{|
+
-
|[[Image:Kristina.jpg|left|50px|caption]]
+
-
|
+
-
* Co-founder
+
-
* Developer
+
-
* Research Associate at the [http://www.gladstone.ucsf.edu Gladstone Institute]
+
-
|}
+
-
==== Martina Kutmon ====
+
-
{|
+
-
|[[Image:Tina.jpg|left|50px|caption]]
+
-
|
+
-
* Developer
+
-
* PhD researcher at [http://www.bigcat.unimaas.nl/index.html Maastricht University]
+
-
|}
+
-
 
+
-
==== Andra Waagmeester ====
+
-
{|
+
-
|[[Image:Andra.jpg|left|50px|caption]]
+
-
|
+
-
* Developer
+
-
* PhD researcher at [http://www.bigcat.unimaas.nl/index.html Maastricht University]
+
-
|}
+
-
==== Anwesha Dutta ====
+
-
{|
+
-
|[[Image:Anwesha.jpg|left|50px|caption]]
+
-
|
+
-
* Developer
+
-
* PhD researcher at [http://www.bigcat.unimaas.nl/index.html Maastricht University]
+
-
|}
+
-
==== Anders Riutta ====
+
-
{|
+
-
|[[Image:Anders.jpg|left|50px|caption]]
+
-
|
+
-
* Developer
+
-
* Software developer at [http://www.gladstone.ucsf.edu Gladstone Institute]
+
-
|}
+
-
 
+
-
==== Egon Willighagen ====
+
-
* Developer
+
-
* Researcher at [http://www.bigcat.unimaas.nl/index.html Maastricht University]
+
-
 
+
-
==== Bruce R. Conklin ====
+
-
{|
+
-
|[[Image: Bruce.jpg|left|50px|caption]]
+
-
|
+
-
* Co-founder
+
-
* Senior investigator at the [http://www.gladstone.ucsf.edu/gladstone/site/conklin/ Gladstone Institutes]
+
-
|}
+
-
==== Chris T. Evelo ====
+
== WikiPathways Team ==
-
{|
+
Find information about the organizational structure and the '''[[WikiPathways:Team|WikiPathways team]]'''.
-
|[[Image:Chris.jpg|left|50px|caption]]
+
-
|
+
-
* Co-founder
+
-
* Head of the Department of Bioinformatics – BiGCaT at [http://www.bigcat.unimaas.nl/people/index.html Maastricht University]
+
-
|}
+
== Developer and administrator pages ==
== Developer and administrator pages ==
Line 111: Line 31:
* [[Special:ListUsers | User snoop]]
* [[Special:ListUsers | User snoop]]
* [[Bots]]  
* [[Bots]]  
-
* [[News_archive]]
 
* [[Special:SpecialCurationTags|Overview of curation tags]]
* [[Special:SpecialCurationTags|Overview of curation tags]]

Current revision

Contents

WikiPathways development

As an open source project, we welcome new developers at all levels. Please visit our repo at https://github.com/wikipathways/wikipathways.org. Built upon MediaWiki, the site includes numerous custom extensions, javascript, skins and hacks.

How to Contribute

Web Service

See the WikiPathways Web Service page for information on how to access WikiPathways programatically.

SPARQL queries

See the WikiPathways SPARQL queries for example queries to interact with WikiPathways SPARQL query

Project Monitoring

WikiPathways Team

Find information about the organizational structure and the WikiPathways team.

Developer and administrator pages

Retrieved from "https://classic.wikipathways.org/index.php/Development"
Personal tools