User:Egonw

From WikiPathways

Revision as of 09:39, 4 May 2015 (view source) Egonw (Talk | contribs) (Put the comment in the right location again.) ← Previous diff		Revision as of 20:08, 17 July 2015 (view source) Egonw (Talk | contribs) (Added the metabolite test pathway.) Next diff →
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	* [[Pathway:WP2360|Folate Biosynthesis (Bacillus subtilis)]]		* [[Pathway:WP2360|Folate Biosynthesis (Bacillus subtilis)]]
	* [[Pathway:WP2450|Camalexin synthesis (Arabidopsis thaliana)]]		* [[Pathway:WP2450|Camalexin synthesis (Arabidopsis thaliana)]]
		+	* [[Pathway:WP2582|Metabolites Test Pathway]]
	=== Need More Metabolite Identifiers ===		=== Need More Metabolite Identifiers ===

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Revision as of 20:08, 17 July 2015

Contents 1 My WikiPathways 2 My Curation 3 My Pathways 3.1 Histone Modifications 3.2 Nanotoxicology 3.3 Xenobiotics Metabolism 3.4 Malaria 3.5 Random Access 3.6 Need More Metabolite Identifiers 4 About Me

My WikiPathways

• My contributions
• My talk page

My Curation

I am particularly interested in the metabolite bits in WikiPathways, and using Andra's SPARQL end point very much. Check these queries.

Additionally, I have started using Bioclipse for generating curation reports, such as this BSL script on myExperiment.org (aka workflow) to find GPML Label elements with IUPAC names for which there is a ChemSpider CSID.

My Pathways

Below are pathways I started because I found them interesting.

Histone Modifications

• Butyrate-induced histone acetylation (Homo sapiens)
• Histone modifications (Homo sapiens)

Nanotoxicology

• Nanomaterial induced apoptosis (Homo sapiens)
• Nanoparticle triggered autophagic cell death (Homo sapiens)
• Nanoparticle triggered regulated necrosis (Homo sapiens)

Xenobiotics Metabolism

• Diclofenac Metabolic Pathway (Homo sapiens)
• Colchicine Metabolic Pathway (Homo sapiens)
• Moxicylyte Metabolic Pathway (Homo sapiens)
• Methapyrilene Metabolic Pathway (Rattus norvegicus)
• Sulindac Metabolic Pathway (Rattus norvegicus) and Sulindac Metabolic Pathway (Homo sapiens)
• Dantrolene Metabolic Pathway (Mus musculus)
• Aripiprazole Metabolic Pathway (Homo sapiens)

Other drug of which I am interested in the metabolism: amotidine, enalapril, and captopril.

Malaria

• Isoprenoid Precursor Biosynthesis in Pf acipoplasts (Homo sapiens)

Random Access

• Folate Biosynthesis (Bacillus subtilis)
• Camalexin synthesis (Arabidopsis thaliana)
• Metabolites Test Pathway

Need More Metabolite Identifiers

• Pathway:WP269
• Pathway:WP270
• Pathway:WP1423
• Pathway:WP1945
• Pathway:WP2353

About Me

• Real name: Egon Willighagen
• Work: BiGCaT, Maastricht University
• Location: Maastricht
• Professional Interests: metabolomics
• Blog: http://chem-bla-ics.blogspot.com/