User:Egonw
From WikiPathways
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Current revision (07:53, 1 November 2017) (view source) (→Need More Metabolite Identifiers) |
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| + | {{Userboxtop}} | ||
| + | {{User ORCID|0000-0001-7542-0286}} | ||
| + | {{User Wikidata|Q20895241}} | ||
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| + | I hereby elect to apply CC0 to all my contributions to WikiPathways. | ||
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== My WikiPathways == | == My WikiPathways == | ||
* [[Special:Contributions/Egonw|My contributions]] | * [[Special:Contributions/Egonw|My contributions]] | ||
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I am particularly interested in the metabolite bits in WikiPathways, and using | I am particularly interested in the metabolite bits in WikiPathways, and using | ||
[[User:Andra|Andra]]'s SPARQL end point very much. Check [[Help:WikiPathways Metabolomics|these queries]]. | [[User:Andra|Andra]]'s SPARQL end point very much. Check [[Help:WikiPathways Metabolomics|these queries]]. | ||
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| + | Additionally, I have started using [http://www.bioclipse.net/ Bioclipse] for generating curation reports, such as [http://www.myexperiment.org/workflows/3701.html this BSL script on myExperiment.org] (aka workflow) to find GPML Label elements with IUPAC names for which there is a [http://chemspider.com/ ChemSpider] CSID. | ||
== My Pathways == | == My Pathways == | ||
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* [[Pathway:WP2366|Butyrate-induced histone acetylation (Homo sapiens)]] | * [[Pathway:WP2366|Butyrate-induced histone acetylation (Homo sapiens)]] | ||
* [[Pathway:WP2369|Histone modifications (Homo sapiens)]] | * [[Pathway:WP2369|Histone modifications (Homo sapiens)]] | ||
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| + | === Gut Metabolism === | ||
| + | * [[Pathway:WP3627|Gut-Liver Indole Metabolism]] | ||
=== Nanotoxicology === | === Nanotoxicology === | ||
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=== Xenobiotics Metabolism === | === Xenobiotics Metabolism === | ||
* [[Pathway:WP2491|Diclofenac Metabolic Pathway (Homo sapiens)]] | * [[Pathway:WP2491|Diclofenac Metabolic Pathway (Homo sapiens)]] | ||
| + | * [[Pathway:WP2536|Colchicine Metabolic Pathway (Homo sapiens)]] | ||
| + | * [[Pathway:WP2537|Moxicylyte Metabolic Pathway (Homo sapiens)]] | ||
| + | * [[Pathway:WP2540|Methapyrilene Metabolic Pathway (Rattus norvegicus)]] | ||
| + | * [[Pathway:WP2541|Sulindac Metabolic Pathway (Rattus norvegicus)]] and [[Pathway:WP2542|Sulindac Metabolic Pathway (Homo sapiens)]] | ||
| + | * [[Pathway:WP2561|Dantrolene Metabolic Pathway (Mus musculus)]] | ||
| + | * [[Pathway:WP2640|Aripiprazole Metabolic Pathway (Homo sapiens)]] (with a link to XMetDB, http://www.xmetdb.org/xmetdb) | ||
| + | * [[Pathway:WP2646|Lidocaine metabolism (Homo sapiens)]] | ||
| + | * [[Pathway:WP2816|Felbamate metabolism (Homo sapiens)]] | ||
| + | * [[Pathway:WP3633|Caffeine and Theobromine metabolism (Homo sapiens)]] | ||
| - | Other drug of which I am interested in the metabolism: | + | Other drug of which I am interested in the metabolism: amotidine, enalapril, and captopril. |
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| + | === Malaria === | ||
| + | * [[Pathway:WP2918|Isoprenoid Precursor Biosynthesis in Pf acipoplasts (Homo sapiens)]] | ||
=== Random Access === | === Random Access === | ||
* [[Pathway:WP2360|Folate Biosynthesis (Bacillus subtilis)]] | * [[Pathway:WP2360|Folate Biosynthesis (Bacillus subtilis)]] | ||
* [[Pathway:WP2450|Camalexin synthesis (Arabidopsis thaliana)]] | * [[Pathway:WP2450|Camalexin synthesis (Arabidopsis thaliana)]] | ||
| + | * [[Pathway:WP2582|Metabolites Test Pathway]] | ||
| + | * [[Pathway:WP3601|Composition of Lipid Particles]] | ||
| + | * [[Pathway:WP3953|mRNA, protein, and metabolite inducation pathway by cyclosporin A (Homo sapiens)]] | ||
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| + | === Need More Metabolite Identifiers === | ||
| + | |||
| + | * [[Pathway:WP1423]] | ||
| + | * [[Pathway:WP2353]] | ||
== About Me == | == About Me == | ||
* ''Real name'': Egon Willighagen | * ''Real name'': Egon Willighagen | ||
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* ''Work'': BiGCaT, Maastricht University | * ''Work'': BiGCaT, Maastricht University | ||
* ''Location'': Maastricht | * ''Location'': Maastricht | ||
* ''Professional Interests'': metabolomics | * ''Professional Interests'': metabolomics | ||
* ''Blog'': http://chem-bla-ics.blogspot.com/ | * ''Blog'': http://chem-bla-ics.blogspot.com/ | ||
Current revision
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I hereby elect to apply CC0 to all my contributions to WikiPathways.
Contents |
My WikiPathways
My Curation
I am particularly interested in the metabolite bits in WikiPathways, and using Andra's SPARQL end point very much. Check these queries.
Additionally, I have started using Bioclipse for generating curation reports, such as this BSL script on myExperiment.org (aka workflow) to find GPML Label elements with IUPAC names for which there is a ChemSpider CSID.
My Pathways
Below are pathways I started because I found them interesting.
Histone Modifications
Gut Metabolism
Nanotoxicology
- Nanomaterial induced apoptosis (Homo sapiens)
- Nanoparticle triggered autophagic cell death (Homo sapiens)
- Nanoparticle triggered regulated necrosis (Homo sapiens)
Xenobiotics Metabolism
- Diclofenac Metabolic Pathway (Homo sapiens)
- Colchicine Metabolic Pathway (Homo sapiens)
- Moxicylyte Metabolic Pathway (Homo sapiens)
- Methapyrilene Metabolic Pathway (Rattus norvegicus)
- Sulindac Metabolic Pathway (Rattus norvegicus) and Sulindac Metabolic Pathway (Homo sapiens)
- Dantrolene Metabolic Pathway (Mus musculus)
- Aripiprazole Metabolic Pathway (Homo sapiens) (with a link to XMetDB, http://www.xmetdb.org/xmetdb)
- Lidocaine metabolism (Homo sapiens)
- Felbamate metabolism (Homo sapiens)
- Caffeine and Theobromine metabolism (Homo sapiens)
Other drug of which I am interested in the metabolism: amotidine, enalapril, and captopril.
Malaria
Random Access
- Folate Biosynthesis (Bacillus subtilis)
- Camalexin synthesis (Arabidopsis thaliana)
- Metabolites Test Pathway
- Composition of Lipid Particles
- mRNA, protein, and metabolite inducation pathway by cyclosporin A (Homo sapiens)
Need More Metabolite Identifiers
About Me
- Real name: Egon Willighagen
- Work: BiGCaT, Maastricht University
- Location: Maastricht
- Professional Interests: metabolomics
- Blog: http://chem-bla-ics.blogspot.com/
