User:Egonw
From WikiPathways
(Difference between revisions)
Current revision (07:53, 1 November 2017) (view source) (→Need More Metabolite Identifiers) |
|||
| (18 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | {{Userboxtop}} | ||
{{User ORCID|0000-0001-7542-0286}} | {{User ORCID|0000-0001-7542-0286}} | ||
| + | {{User Wikidata|Q20895241}} | ||
| + | {{Userboxbottom}} | ||
| + | |||
| + | I hereby elect to apply CC0 to all my contributions to WikiPathways. | ||
== My WikiPathways == | == My WikiPathways == | ||
| Line 19: | Line 24: | ||
* [[Pathway:WP2366|Butyrate-induced histone acetylation (Homo sapiens)]] | * [[Pathway:WP2366|Butyrate-induced histone acetylation (Homo sapiens)]] | ||
* [[Pathway:WP2369|Histone modifications (Homo sapiens)]] | * [[Pathway:WP2369|Histone modifications (Homo sapiens)]] | ||
| + | |||
| + | === Gut Metabolism === | ||
| + | * [[Pathway:WP3627|Gut-Liver Indole Metabolism]] | ||
=== Nanotoxicology === | === Nanotoxicology === | ||
| Line 32: | Line 40: | ||
* [[Pathway:WP2541|Sulindac Metabolic Pathway (Rattus norvegicus)]] and [[Pathway:WP2542|Sulindac Metabolic Pathway (Homo sapiens)]] | * [[Pathway:WP2541|Sulindac Metabolic Pathway (Rattus norvegicus)]] and [[Pathway:WP2542|Sulindac Metabolic Pathway (Homo sapiens)]] | ||
* [[Pathway:WP2561|Dantrolene Metabolic Pathway (Mus musculus)]] | * [[Pathway:WP2561|Dantrolene Metabolic Pathway (Mus musculus)]] | ||
| - | * [[Pathway:WP2640|Aripiprazole Metabolic Pathway (Homo sapiens)]] | + | * [[Pathway:WP2640|Aripiprazole Metabolic Pathway (Homo sapiens)]] (with a link to XMetDB, http://www.xmetdb.org/xmetdb) |
| - | + | * [[Pathway:WP2646|Lidocaine metabolism (Homo sapiens)]] | |
| + | * [[Pathway:WP2816|Felbamate metabolism (Homo sapiens)]] | ||
| + | * [[Pathway:WP3633|Caffeine and Theobromine metabolism (Homo sapiens)]] | ||
Other drug of which I am interested in the metabolism: amotidine, enalapril, and captopril. | Other drug of which I am interested in the metabolism: amotidine, enalapril, and captopril. | ||
| + | |||
| + | === Malaria === | ||
| + | * [[Pathway:WP2918|Isoprenoid Precursor Biosynthesis in Pf acipoplasts (Homo sapiens)]] | ||
=== Random Access === | === Random Access === | ||
* [[Pathway:WP2360|Folate Biosynthesis (Bacillus subtilis)]] | * [[Pathway:WP2360|Folate Biosynthesis (Bacillus subtilis)]] | ||
* [[Pathway:WP2450|Camalexin synthesis (Arabidopsis thaliana)]] | * [[Pathway:WP2450|Camalexin synthesis (Arabidopsis thaliana)]] | ||
| + | * [[Pathway:WP2582|Metabolites Test Pathway]] | ||
| + | * [[Pathway:WP3601|Composition of Lipid Particles]] | ||
| + | * [[Pathway:WP3953|mRNA, protein, and metabolite inducation pathway by cyclosporin A (Homo sapiens)]] | ||
=== Need More Metabolite Identifiers === | === Need More Metabolite Identifiers === | ||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
* [[Pathway:WP1423]] | * [[Pathway:WP1423]] | ||
| - | |||
* [[Pathway:WP2353]] | * [[Pathway:WP2353]] | ||
Current revision
|
I hereby elect to apply CC0 to all my contributions to WikiPathways.
Contents |
My WikiPathways
My Curation
I am particularly interested in the metabolite bits in WikiPathways, and using Andra's SPARQL end point very much. Check these queries.
Additionally, I have started using Bioclipse for generating curation reports, such as this BSL script on myExperiment.org (aka workflow) to find GPML Label elements with IUPAC names for which there is a ChemSpider CSID.
My Pathways
Below are pathways I started because I found them interesting.
Histone Modifications
Gut Metabolism
Nanotoxicology
- Nanomaterial induced apoptosis (Homo sapiens)
- Nanoparticle triggered autophagic cell death (Homo sapiens)
- Nanoparticle triggered regulated necrosis (Homo sapiens)
Xenobiotics Metabolism
- Diclofenac Metabolic Pathway (Homo sapiens)
- Colchicine Metabolic Pathway (Homo sapiens)
- Moxicylyte Metabolic Pathway (Homo sapiens)
- Methapyrilene Metabolic Pathway (Rattus norvegicus)
- Sulindac Metabolic Pathway (Rattus norvegicus) and Sulindac Metabolic Pathway (Homo sapiens)
- Dantrolene Metabolic Pathway (Mus musculus)
- Aripiprazole Metabolic Pathway (Homo sapiens) (with a link to XMetDB, http://www.xmetdb.org/xmetdb)
- Lidocaine metabolism (Homo sapiens)
- Felbamate metabolism (Homo sapiens)
- Caffeine and Theobromine metabolism (Homo sapiens)
Other drug of which I am interested in the metabolism: amotidine, enalapril, and captopril.
Malaria
Random Access
- Folate Biosynthesis (Bacillus subtilis)
- Camalexin synthesis (Arabidopsis thaliana)
- Metabolites Test Pathway
- Composition of Lipid Particles
- mRNA, protein, and metabolite inducation pathway by cyclosporin A (Homo sapiens)
Need More Metabolite Identifiers
About Me
- Real name: Egon Willighagen
- Work: BiGCaT, Maastricht University
- Location: Maastricht
- Professional Interests: metabolomics
- Blog: http://chem-bla-ics.blogspot.com/
