User:Egonw

From WikiPathways

Userboxes iD This user has the ORCID identifier: 0000-0001-7542-0286 This user has the Wikidata identifier: Q20895241

I hereby elect to apply CC0 to all my contributions to WikiPathways.

Contents 1 My WikiPathways 2 My Curation 3 My Pathways 3.1 Histone Modifications 3.2 Gut Metabolism 3.3 Nanotoxicology 3.4 Xenobiotics Metabolism 3.5 Malaria 3.6 Random Access 3.7 Need More Metabolite Identifiers 4 About Me

My WikiPathways

• My contributions
• My talk page

My Curation

I am particularly interested in the metabolite bits in WikiPathways, and using Andra's SPARQL end point very much. Check these queries.

Additionally, I have started using Bioclipse for generating curation reports, such as this BSL script on myExperiment.org (aka workflow) to find GPML Label elements with IUPAC names for which there is a ChemSpider CSID.

My Pathways

Below are pathways I started because I found them interesting.

Histone Modifications

• Butyrate-induced histone acetylation (Homo sapiens)
• Histone modifications (Homo sapiens)

Gut Metabolism

• Gut-Liver Indole Metabolism

Nanotoxicology

• Nanomaterial induced apoptosis (Homo sapiens)
• Nanoparticle triggered autophagic cell death (Homo sapiens)
• Nanoparticle triggered regulated necrosis (Homo sapiens)

Xenobiotics Metabolism

• Diclofenac Metabolic Pathway (Homo sapiens)
• Colchicine Metabolic Pathway (Homo sapiens)
• Moxicylyte Metabolic Pathway (Homo sapiens)
• Methapyrilene Metabolic Pathway (Rattus norvegicus)
• Sulindac Metabolic Pathway (Rattus norvegicus) and Sulindac Metabolic Pathway (Homo sapiens)
• Dantrolene Metabolic Pathway (Mus musculus)
• Aripiprazole Metabolic Pathway (Homo sapiens) (with a link to XMetDB, http://www.xmetdb.org/xmetdb)
• Lidocaine metabolism (Homo sapiens)
• Felbamate metabolism (Homo sapiens)
• Caffeine and Theobromine metabolism (Homo sapiens)

Other drug of which I am interested in the metabolism: amotidine, enalapril, and captopril.

Malaria

• Isoprenoid Precursor Biosynthesis in Pf acipoplasts (Homo sapiens)

Random Access

• Folate Biosynthesis (Bacillus subtilis)
• Camalexin synthesis (Arabidopsis thaliana)
• Metabolites Test Pathway
• Composition of Lipid Particles
• mRNA, protein, and metabolite inducation pathway by cyclosporin A (Homo sapiens)

Need More Metabolite Identifiers

• Pathway:WP1423
• Pathway:WP2353

About Me

• Real name: Egon Willighagen
• Work: BiGCaT, Maastricht University
• Location: Maastricht
• Professional Interests: metabolomics
• Blog: http://chem-bla-ics.blogspot.com/