User:Egonw

From WikiPathways

Contents 1 My WikiPathways 2 My Curation 3 My Pathways 3.1 Histone Modifications 3.2 Nanotoxicology 3.3 Xenobiotics Metabolism 3.4 Random Access 3.5 Need More Metabolite Identifiers 4 About Me

My WikiPathways

• My contributions
• My talk page

My Curation

I am particularly interested in the metabolite bits in WikiPathways, and using Andra's SPARQL end point very much. Check these queries.

Additionally, I have started using Bioclipse for generating curation reports, such as this BSL script on myExperiment.org (aka workflow) to find GPML Label elements with IUPAC names for which there is a ChemSpider CSID.

My Pathways

Below are pathways I started because I found them interesting.

Histone Modifications

• Butyrate-induced histone acetylation (Homo sapiens)
• Histone modifications (Homo sapiens)

Nanotoxicology

• Nanomaterial induced apoptosis (Homo sapiens)
• Nanoparticle triggered autophagic cell death (Homo sapiens)
• Nanoparticle triggered regulated necrosis (Homo sapiens)

Xenobiotics Metabolism

• Diclofenac Metabolic Pathway (Homo sapiens)
• Colchicine Metabolic Pathway (Homo sapiens)
• Moxicylyte Metabolic Pathway (Homo sapiens)
• Methapyrilene Metabolic Pathway (Rattus norvegicus)
• Sulindac Metabolic Pathway (Rattus norvegicus) and Sulindac Metabolic Pathway (Homo sapiens)
• Dantrolene Metabolic Pathway (Mus musculus)

Other drug of which I am interested in the metabolism: amotidine, enalapril, and captopril.

Random Access

• Folate Biosynthesis (Bacillus subtilis)
• Camalexin synthesis (Arabidopsis thaliana)

Need More Metabolite Identifiers

• Pathway:WP79
• Pathway:WP192
• Pathway:WP269
• Pathway:WP270
• Pathway:WP427
• Pathway:WP479
• Pathway:WP1423
• Pathway:WP2353

About Me

• Real name: Egon Willighagen
• ORCID: 0000-0001-7542-0286
• Work: BiGCaT, Maastricht University
• Location: Maastricht
• Professional Interests: metabolomics
• Blog: http://chem-bla-ics.blogspot.com/