User:Egonw
From WikiPathways
(Difference between revisions)
(→Xenobiotics Metabolism) |
|||
| Line 27: | Line 27: | ||
=== Gut Metabolism === | === Gut Metabolism === | ||
* [[Pathway:WP3627|Gut-Liver Indole Metabolism]] | * [[Pathway:WP3627|Gut-Liver Indole Metabolism]] | ||
| + | * [[Pathway:WP3650|Acetate mediated promotion of metabolic syndrome (Rattus norvegicus)]] | ||
=== Nanotoxicology === | === Nanotoxicology === | ||
| Line 32: | Line 33: | ||
* [[Pathway:WP2509|Nanoparticle triggered autophagic cell death (Homo sapiens)]] | * [[Pathway:WP2509|Nanoparticle triggered autophagic cell death (Homo sapiens)]] | ||
* [[Pathway:WP2513|Nanoparticle triggered regulated necrosis (Homo sapiens)]] | * [[Pathway:WP2513|Nanoparticle triggered regulated necrosis (Homo sapiens)]] | ||
| + | * [[Pathway:WP5336|Induction of autophagy and toll-like receptor signaling by graphene oxide (Homo sapiens)]] | ||
=== Xenobiotics Metabolism === | === Xenobiotics Metabolism === | ||
| Line 41: | Line 43: | ||
* [[Pathway:WP2561|Dantrolene Metabolic Pathway (Mus musculus)]] | * [[Pathway:WP2561|Dantrolene Metabolic Pathway (Mus musculus)]] | ||
* [[Pathway:WP2640|Aripiprazole Metabolic Pathway (Homo sapiens)]] (with a link to XMetDB, http://www.xmetdb.org/xmetdb) | * [[Pathway:WP2640|Aripiprazole Metabolic Pathway (Homo sapiens)]] (with a link to XMetDB, http://www.xmetdb.org/xmetdb) | ||
| + | * [[Pathway:WP2645|Heroin metabolism (Homo sapiens)]] | ||
* [[Pathway:WP2646|Lidocaine metabolism (Homo sapiens)]] | * [[Pathway:WP2646|Lidocaine metabolism (Homo sapiens)]] | ||
* [[Pathway:WP2816|Felbamate metabolism (Homo sapiens)]] | * [[Pathway:WP2816|Felbamate metabolism (Homo sapiens)]] | ||
| Line 50: | Line 53: | ||
=== Malaria === | === Malaria === | ||
* [[Pathway:WP2918|Isoprenoid Precursor Biosynthesis in Pf acipoplasts (Homo sapiens)]] | * [[Pathway:WP2918|Isoprenoid Precursor Biosynthesis in Pf acipoplasts (Homo sapiens)]] | ||
| + | |||
| + | === SARS-CoV-2 / COVID-19 === | ||
| + | * [[Pathway:WP4846|SARS-CoV-2 and COVID-19 pathway (Homo sapiens)]] | ||
| + | * [[Pathway:WP4853|Linoleic acid metabolism affected by SARS-CoV-2 (Homo sapiens)]] | ||
| + | * [[Pathway:WP4904|LDLRAD4 and what we know about it (Homo sapiens)]] | ||
| + | * [[Pathway:WP5255|SARS-CoV-2 envelope lipid composition and human cell binding (Homo sapiens)]] | ||
| + | |||
| + | === Daphnia === | ||
| + | * [[Pathway:WP5237|Serotonin reuptake inhibitor response (Daphnia magna)]] | ||
| + | * [[Pathway:WP5386|Insulin and TOR signaling genes (Daphnia pulex)]] | ||
| + | |||
| + | === Annotated lists === | ||
| + | * [[Pathway:WP3295|Chemical compounds to monitor proteins (Homo sapiens)]] | ||
| + | * [[Pathway:WP4475|Twelve loci associated with ADHD (Homo sapiens)]] | ||
| + | * [[Pathway:WP5033|Genes associated with the development of rheumatoid arthritis (Homo sapiens)]] | ||
| + | * [[Pathway:WP5579|PFAS in Dutch population (Homo sapiens)]] | ||
=== Random Access === | === Random Access === | ||
* [[Pathway:WP2360|Folate Biosynthesis (Bacillus subtilis)]] | * [[Pathway:WP2360|Folate Biosynthesis (Bacillus subtilis)]] | ||
* [[Pathway:WP2450|Camalexin synthesis (Arabidopsis thaliana)]] | * [[Pathway:WP2450|Camalexin synthesis (Arabidopsis thaliana)]] | ||
| + | * [[Pathway:WP2571|Polycystic kidney disease pathway (Homo sapiens)]] | ||
* [[Pathway:WP2582|Metabolites Test Pathway]] | * [[Pathway:WP2582|Metabolites Test Pathway]] | ||
* [[Pathway:WP3601|Composition of Lipid Particles]] | * [[Pathway:WP3601|Composition of Lipid Particles]] | ||
| - | * [[Pathway:WP3953|mRNA, protein, and metabolite | + | * [[Pathway:WP3953|mRNA, protein, and metabolite induced stress pathway by cyclosporin A (Homo sapiens)]] |
| - | * [[Pathway: | + | * [[Pathway:WP4335|Eicosanoid lipid synthesis map (Mus musculus)]] |
| - | * [[Pathway: | + | * [[Pathway:WP5239|Lac-Phe pathway (Homo sapiens)]] |
| + | * [[Pathway:WP5240|Lac-Phe pathway (Mus musculus)]] | ||
| + | * [[Pathway:WP5283|Chronic hyperglycemia impairment of neuron function (Homo sapiens)]] | ||
| + | * [[Pathway:WP5397|Vitamin A1 and A5/X pathways (Homo sapiens)]] | ||
* [[Pathway:WP5504|Disorders of mitochondrial homeostatis, dynamics, protein import, and quality control (Homo sapiens)]] | * [[Pathway:WP5504|Disorders of mitochondrial homeostatis, dynamics, protein import, and quality control (Homo sapiens)]] | ||
| + | * [[Pathway:WP5505|Glycosylphosphatidyl inositol anchor pathway (Homo sapiens)]] | ||
| + | * [[Pathway:WP5425|Metabolism of T-2 toxin and HT-2 toxin (Triticum aestivum)]] | ||
| + | |||
| + | === Homology converted === | ||
| + | These can be removed at some point. | ||
| + | * [[Pathway:WP3843|Vitamin A and carotenoid metabolism (Bos taurus)]] | ||
| + | |||
=== Need More Metabolite Identifiers === | === Need More Metabolite Identifiers === | ||
| Line 68: | Line 98: | ||
== About Me == | == About Me == | ||
* ''Real name'': Egon Willighagen | * ''Real name'': Egon Willighagen | ||
| - | * ''Work'': | + | * ''Work'': Dept of Translational Genomics, Maastricht University |
* ''Location'': Maastricht | * ''Location'': Maastricht | ||
| - | * ''Professional Interests'': metabolomics | + | * ''Professional Interests'': metabolomics, toxicology |
| - | * ''Blog'': | + | * ''Blog'': https://chem-bla-ics.linkedchemistry.info/ |
Revision as of 08:18, 20 July 2025
|
I hereby elect to apply CC0 to all my contributions to WikiPathways.
Contents |
My WikiPathways
My Curation
I am particularly interested in the metabolite bits in WikiPathways, and using Andra's SPARQL end point very much. Check these queries.
Additionally, I have started using Bioclipse for generating curation reports, such as this BSL script on myExperiment.org (aka workflow) to find GPML Label elements with IUPAC names for which there is a ChemSpider CSID.
My Pathways
Below are pathways I started because I found them interesting.
Histone Modifications
Gut Metabolism
Nanotoxicology
- Nanomaterial induced apoptosis (Homo sapiens)
- Nanoparticle triggered autophagic cell death (Homo sapiens)
- Nanoparticle triggered regulated necrosis (Homo sapiens)
- Induction of autophagy and toll-like receptor signaling by graphene oxide (Homo sapiens)
Xenobiotics Metabolism
- Diclofenac Metabolic Pathway (Homo sapiens)
- Colchicine Metabolic Pathway (Homo sapiens)
- Moxicylyte Metabolic Pathway (Homo sapiens)
- Methapyrilene Metabolic Pathway (Rattus norvegicus)
- Sulindac Metabolic Pathway (Rattus norvegicus) and Sulindac Metabolic Pathway (Homo sapiens)
- Dantrolene Metabolic Pathway (Mus musculus)
- Aripiprazole Metabolic Pathway (Homo sapiens) (with a link to XMetDB, http://www.xmetdb.org/xmetdb)
- Heroin metabolism (Homo sapiens)
- Lidocaine metabolism (Homo sapiens)
- Felbamate metabolism (Homo sapiens)
- Caffeine and Theobromine metabolism (Homo sapiens)
- Rotenone metabolism (Homo sapiens)
Other drug of which I am interested in the metabolism: amotidine, enalapril, and captopril.
Malaria
SARS-CoV-2 / COVID-19
- SARS-CoV-2 and COVID-19 pathway (Homo sapiens)
- Linoleic acid metabolism affected by SARS-CoV-2 (Homo sapiens)
- LDLRAD4 and what we know about it (Homo sapiens)
- SARS-CoV-2 envelope lipid composition and human cell binding (Homo sapiens)
Daphnia
- Serotonin reuptake inhibitor response (Daphnia magna)
- Insulin and TOR signaling genes (Daphnia pulex)
Annotated lists
- Chemical compounds to monitor proteins (Homo sapiens)
- Twelve loci associated with ADHD (Homo sapiens)
- Genes associated with the development of rheumatoid arthritis (Homo sapiens)
- PFAS in Dutch population (Homo sapiens)
Random Access
- Folate Biosynthesis (Bacillus subtilis)
- Camalexin synthesis (Arabidopsis thaliana)
- Polycystic kidney disease pathway (Homo sapiens)
- Metabolites Test Pathway
- Composition of Lipid Particles
- mRNA, protein, and metabolite induced stress pathway by cyclosporin A (Homo sapiens)
- Eicosanoid lipid synthesis map (Mus musculus)
- Lac-Phe pathway (Homo sapiens)
- Lac-Phe pathway (Mus musculus)
- Chronic hyperglycemia impairment of neuron function (Homo sapiens)
- Vitamin A1 and A5/X pathways (Homo sapiens)
- Disorders of mitochondrial homeostatis, dynamics, protein import, and quality control (Homo sapiens)
- Glycosylphosphatidyl inositol anchor pathway (Homo sapiens)
- Metabolism of T-2 toxin and HT-2 toxin (Triticum aestivum)
Homology converted
These can be removed at some point.
Need More Metabolite Identifiers
About Me
- Real name: Egon Willighagen
- Work: Dept of Translational Genomics, Maastricht University
- Location: Maastricht
- Professional Interests: metabolomics, toxicology
- Blog: https://chem-bla-ics.linkedchemistry.info/
