User:Egonw
From WikiPathways
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=== Daphnia === | === Daphnia === | ||
| + | * [[Pathway:WP5077|Response to acute ibuprofen exposure (Daphnia magna)]] | ||
* [[Pathway:WP5237|Serotonin reuptake inhibitor response (Daphnia magna)]] | * [[Pathway:WP5237|Serotonin reuptake inhibitor response (Daphnia magna)]] | ||
* [[Pathway:WP5386|Insulin and TOR signaling genes (Daphnia pulex)]] | * [[Pathway:WP5386|Insulin and TOR signaling genes (Daphnia pulex)]] | ||
Current revision
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I hereby elect to apply CC0 to all my contributions to WikiPathways.
Contents |
My WikiPathways
My Curation
I am particularly interested in the metabolite bits in WikiPathways, and using Andra's SPARQL end point very much. Check these queries.
Additionally, I have started using Bioclipse for generating curation reports, such as this BSL script on myExperiment.org (aka workflow) to find GPML Label elements with IUPAC names for which there is a ChemSpider CSID.
My Pathways
Below are pathways I started because I found them interesting.
Histone Modifications
Gut Metabolism
Nanotoxicology
- Nanomaterial induced apoptosis (Homo sapiens)
- Nanoparticle triggered autophagic cell death (Homo sapiens)
- Nanoparticle triggered regulated necrosis (Homo sapiens)
- Induction of autophagy and toll-like receptor signaling by graphene oxide (Homo sapiens)
Xenobiotics Metabolism
- Diclofenac Metabolic Pathway (Homo sapiens)
- Colchicine Metabolic Pathway (Homo sapiens)
- Moxicylyte Metabolic Pathway (Homo sapiens)
- Methapyrilene Metabolic Pathway (Rattus norvegicus)
- Sulindac Metabolic Pathway (Rattus norvegicus) and Sulindac Metabolic Pathway (Homo sapiens)
- Dantrolene Metabolic Pathway (Mus musculus)
- Aripiprazole Metabolic Pathway (Homo sapiens) (with a link to XMetDB, http://www.xmetdb.org/xmetdb)
- Heroin metabolism (Homo sapiens)
- Lidocaine metabolism (Homo sapiens)
- Felbamate metabolism (Homo sapiens)
- Caffeine and Theobromine metabolism (Homo sapiens)
- Rotenone metabolism (Homo sapiens)
Other drug of which I am interested in the metabolism: amotidine, enalapril, and captopril.
Malaria
SARS-CoV-2 / COVID-19
- SARS-CoV-2 and COVID-19 pathway (Homo sapiens)
- Linoleic acid metabolism affected by SARS-CoV-2 (Homo sapiens)
- LDLRAD4 and what we know about it (Homo sapiens)
- SARS-CoV-2 envelope lipid composition and human cell binding (Homo sapiens)
Daphnia
- Response to acute ibuprofen exposure (Daphnia magna)
- Serotonin reuptake inhibitor response (Daphnia magna)
- Insulin and TOR signaling genes (Daphnia pulex)
Annotated lists
- Chemical compounds to monitor proteins (Homo sapiens)
- Twelve loci associated with ADHD (Homo sapiens)
- Genes associated with the development of rheumatoid arthritis (Homo sapiens)
- PFAS in Dutch population (Homo sapiens)
Random Access
- Folate Biosynthesis (Bacillus subtilis)
- Camalexin synthesis (Arabidopsis thaliana)
- Polycystic kidney disease pathway (Homo sapiens)
- Metabolites Test Pathway
- Composition of Lipid Particles
- mRNA, protein, and metabolite induced stress pathway by cyclosporin A (Homo sapiens)
- Eicosanoid lipid synthesis map (Mus musculus)
- Lac-Phe pathway (Homo sapiens)
- Lac-Phe pathway (Mus musculus)
- Chronic hyperglycemia impairment of neuron function (Homo sapiens)
- Vitamin A1 and A5/X pathways (Homo sapiens)
- Disorders of mitochondrial homeostatis, dynamics, protein import, and quality control (Homo sapiens)
- Glycosylphosphatidyl inositol anchor pathway (Homo sapiens)
- Metabolism of T-2 toxin and HT-2 toxin (Triticum aestivum)
Homology converted
These can be removed at some point.
Need More Metabolite Identifiers
About Me
- Real name: Egon Willighagen
- Work: Dept of Translational Genomics, Maastricht University
- Location: Maastricht
- Professional Interests: metabolomics, toxicology
- Blog: https://chem-bla-ics.linkedchemistry.info/
